View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_high_1 (Length: 469)
Name: NF0794_high_1
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 54637632 - 54638091
Alignment:
| Q |
1 |
acgagagcatgttaccacaggcctcatgtggggcaatgtttgaatannnnnnnnnnnnnnngtctctaaccttgatcttttggagggaataaaagtctat |
100 |
Q |
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| T |
54637632 |
acgagagcatgttaccacaggcctcatgtggggcaatgtttgaatattttattttttttt-gtctctaaccttgatcttttggagggaataaaagtctat |
54637730 |
T |
|
| Q |
101 |
gttttgtactgaattgccgttgcagcaagcaaggcaaaataatagtaatgtaatataagaggacaagtacaccgcaagacctatgcataccatttccatt |
200 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54637731 |
gttttgtactgaaatgcagttgcagcaagcaaggcaaaataatagtaatgtaatataagaggacaagtacactgcaagacctatgcataccatttccatt |
54637830 |
T |
|
| Q |
201 |
ccatcccatccatattttactttgatattgtgaattgtagtcaatggcaggtgggagtaacatgatgagcaagattctattgatcggtggcaccggttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54637831 |
ccatcccatccatattttactttgatattgtgaattgtagtcaatggcaggtgggagtaacatgatgagcaagattctattgatcggtggcaccggttac |
54637930 |
T |
|
| Q |
301 |
atcggaaaattcattgtagaagctagcgccaaagctggccatccaaccttccttctcatccgggaatcaactctttccaaccctactaaatcatccatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54637931 |
atcggaaaattcattgtagaagctagcgccaaagctggccatccaaccttccttctcatccgggaatcaactctttccaaccctactaaatcatccatca |
54638030 |
T |
|
| Q |
401 |
tcaacaaattcaaggacttgtccgtcaattttgttcttgtgcgtcaaatcctattcttttc |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54638031 |
tcaacaaattcaaggacttgtccgtcaattttgttcttgtgcgtcaaatcctattcttttc |
54638091 |
T |
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