View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0794_high_12 (Length: 249)
Name: NF0794_high_12
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 52584038 - 52584271
Alignment:
| Q |
1 |
tttttcattcattctatcaatcacatttccaccaacatcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52584038 |
tttttcattcattctatcaatcacatttccaccaacatcaacaagatcttcaagaagtgactgtactggtttaaggtatctagagttcccaataacagaa |
52584137 |
T |
|
| Q |
101 |
ccaaaactctcacttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584138 |
ccaaaactctcacttccataagaagtagaagtagaacggttcaataataatgagttattattattagaacctgaagcaaaagttccacttccaccactga |
52584237 |
T |
|
| Q |
201 |
aaaaataatcacttgttagattctccaccacagg |
234 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
52584238 |
aaaaataatcactagttagattctccaccacagg |
52584271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3 times since January 2019
Visitors: 5846