View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_high_3 (Length: 427)
Name: NF0794_high_3
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 68 - 399
Target Start/End: Original strand, 46472420 - 46472749
Alignment:
| Q |
68 |
ttacacgagtacgatttcgatttattgaccatgtgggaactaggattcaaatattacttgatatcagtttgatgaactcggcaactttggccttggactg |
167 |
Q |
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| T |
46472420 |
ttacacgagtacgatttcgatttattgaccatgtgggaactaggattcaaatattacttgatatcagtttgatgaactcaacaactttggccttggactg |
46472519 |
T |
|
| Q |
168 |
tttaaatattactatgtaagaagtctcagacattttcaaatccataaagacattcaccttgcagtatggaaccaaatactatgcaacctttgtcttaaac |
267 |
Q |
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| T |
46472520 |
tttaaatattactttgtaag---tctcagacattttcaaattcctaaagacattcaccttgcagtatggaaccaaatactatgcaacctttgtcttaaac |
46472616 |
T |
|
| Q |
268 |
tttgctatttttcacttcacaaatctccgtatctttcaccttgtctctaatcctaacaagaccccttaatatctgttct-aattcaacaatcttataatt |
366 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46472617 |
tttgctatttttcacttcacaaatctccatagctttcaccttgtctctaatcctaacaagaccccttaatatctgttctaaattcaacaatcttataatt |
46472716 |
T |
|
| Q |
367 |
gatcttctcaaattgtaatttacctcgagatat |
399 |
Q |
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| T |
46472717 |
gatcttctcaaattgtaatttacctcgagatat |
46472749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 35773603 - 35773506
Alignment:
| Q |
302 |
ttcaccttgtctctaatcctaacaagaccccttaatatctgttctaattcaacaatcttataattgatcttctcaaattgtaatttacctcgagatat |
399 |
Q |
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||||||||| |||||| | ||||||||| ||||| | |||||||| |||||||||| | |||||||||| |||||||||| ||||||||||||||| |
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| T |
35773603 |
ttcaccttggctctaagctcaacaagaccacttaacttttgttctaactcaacaatctcagaattgatcttttcaaattgtattttacctcgagatat |
35773506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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