View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_high_5 (Length: 353)
Name: NF0794_high_5
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_high_5 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 19597 - 19903
Alignment:
| Q |
3 |
cggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtga |
102 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597 |
cggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtga |
19696 |
T |
|
| Q |
103 |
ggaagaaccttctggaacttatgcgtatttctcttattccatacataaccctttcttagccgactgacggttcttgcgcgtactttgacatcaccaagta |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
19697 |
ggaagaaccttatggaacttatgcgtatttctcttatttcatacataaccctttcttagccgactgacagttcttgcgcgtactttgacatcaccaacta |
19796 |
T |
|
| Q |
203 |
agcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaagccacatccatcccactcttatcacgtcttttatcgactatc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
19797 |
agcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaaggcacatccatcccactcttatcacgccttttatcgactatc |
19896 |
T |
|
| Q |
303 |
cgagttt |
309 |
Q |
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||||||| |
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| T |
19897 |
cgagttt |
19903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 14820115 - 14819809
Alignment:
| Q |
3 |
cggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtga |
102 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14820115 |
cggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtga |
14820016 |
T |
|
| Q |
103 |
ggaagaaccttctggaacttatgcgtatttctcttattccatacataaccctttcttagccgactgacggttcttgcgcgtactttgacatcaccaagta |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
14820015 |
ggaagaaccttatggaacttatgcgtatttctcttatttcatacataaccctttcttagccgactgacagttcttgcgcgtactttgacatcaccaacta |
14819916 |
T |
|
| Q |
203 |
agcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaagccacatccatcccactcttatcacgtcttttatcgactatc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
14819915 |
agcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaaggcacatccatcccactcttatcacgccttttatcgactatc |
14819816 |
T |
|
| Q |
303 |
cgagttt |
309 |
Q |
| |
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||||||| |
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| T |
14819815 |
cgagttt |
14819809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 12058473 - 12058230
Alignment:
| Q |
6 |
ataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtgagga |
105 |
Q |
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|||| ||||||||||||| | ||||| ||| | ||| ||||| |||| ||||| |||| ||||||||||||||||||||||| ||||| | || | |
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| T |
12058473 |
ataatgctcgagtattgttactttctcctgagtggtatctcttc-ttcgaataccgattatcacacttgatgactcgatcattactttgagtcgcaag-a |
12058376 |
T |
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| Q |
106 |
agaaccttctggaacttatgcgtatttctcttattcca-tacataaccctttcttagccgactgacggttcttgcgcgtactttgacatcaccaagtaag |
204 |
Q |
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||||||||||| | |||| ||||||||||| | | |||||| || ||||| ||||||||||| ||||||||||||| || ||||||||||| |||| |
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| T |
12058375 |
agaaccttctgaatcttacatgtatttctcttgtcttagtacatacccttttct-agccgactgaccgttcttgcgcgta-ttcgacatcaccaactaag |
12058278 |
T |
|
| Q |
205 |
caacctgattactacactgaaggtgactccaatctctcttgacttact |
252 |
Q |
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||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
12058277 |
caacccgattactacacttgaggtgactccaatctttcttgacttact |
12058230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 2725 - 2601
Alignment:
| Q |
187 |
ttgacatcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaagccacatccatcccactcttatcacg |
286 |
Q |
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||||||||||| | | ||| |||||||||| | | |||||||||| | |||||||||||| ||||| ||| | | |||||||||| | ||||| |||| |
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| T |
2725 |
ttgacatcaccgactgagccacctgattaccatattgaaggtgaccctaatctctcttgatttactcgggtgaggacacatccatcatattcttaccacg |
2626 |
T |
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| Q |
287 |
tcttttatcgactatccgagttttg |
311 |
Q |
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|||| ||||||||||||||||||| |
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| T |
2625 |
cctttcatcgactatccgagttttg |
2601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 1085 - 977
Alignment:
| Q |
5 |
gataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtgagg |
104 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| | ||| ||||||||| |||| | ||||| ||||| ||||||| ||| |||||||||| | ||| |
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| T |
1085 |
gataaggctcgagtatcgttatcttctcctgagaaatacttctttattcagatatcggttataacactcgatgacttgattgctaccctgagtcgcaagg |
986 |
T |
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| Q |
105 |
aagaacctt |
113 |
Q |
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||||||||| |
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| T |
985 |
aagaacctt |
977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 21342853 - 21342748
Alignment:
| Q |
8 |
aaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtgaggaag |
107 |
Q |
| |
|
||||||||||||| || ||| |||| ||| | ||| |||||||||||||||| ||||| ||||| ||||||| ||| |||| ||||| | |||||| |
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|
| T |
21342853 |
aaggctcgagtatcgttatcctctcctgagaaatacatctttattcggataccggttataacactcgatgacttgattgctaccttgagtcgcaaggaag |
21342754 |
T |
|
| Q |
108 |
aacctt |
113 |
Q |
| |
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|||||| |
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|
| T |
21342753 |
aacctt |
21342748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 21332780 - 21332724
Alignment:
| Q |
193 |
tcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgactt |
249 |
Q |
| |
|
||||||| ||||||||| ||||| ||| |||||||||||||| |||||||||||| |
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|
| T |
21332780 |
tcaccaactaagcaacccgattaacgcaccgaaggtgactccaaactctcttgactt |
21332724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 21332968 - 21332860
Alignment:
| Q |
5 |
gataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtgagg |
104 |
Q |
| |
|
|||||||||||||||| || || ||||| ||| | ||| ||||||||| |||||| ||||| ||||| ||||||| ||| |||| ||||| | ||| |
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| T |
21332968 |
gataaggctcgagtatcgttattttctcctgagaaatacttctttattcagataccggttataacactcgatgacttgattgctaccttgagtcgcaagg |
21332869 |
T |
|
| Q |
105 |
aagaacctt |
113 |
Q |
| |
|
||||||||| |
|
|
| T |
21332868 |
aagaacctt |
21332860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 21342668 - 21342612
Alignment:
| Q |
193 |
tcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgactt |
249 |
Q |
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||||||| ||||||||| ||||| ||| |||||||||||||| |||||||||||| |
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|
| T |
21342668 |
tcaccaactaagcaacccgattaacgcaccgaaggtgactccaaactctcttgactt |
21342612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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