View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_high_8 (Length: 293)
Name: NF0794_high_8
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_high_8 |
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| [»] scaffold0005 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 125 - 293
Target Start/End: Original strand, 19450 - 19618
Alignment:
| Q |
125 |
gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt |
224 |
Q |
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| T |
19450 |
gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt |
19549 |
T |
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| Q |
225 |
ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccggataaggttcgagtattgtc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
19550 |
ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatattcggataaggctcgagtattgtc |
19618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 19120 - 19223
Alignment:
| Q |
17 |
acgagtcaacacattttaggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta |
116 |
Q |
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| T |
19120 |
acgagtcaacacattttaggaagttgtgcaactcgccccaaactcgctcatggcgagttggctctggagtatacacgctttaagcgagtttactcgctta |
19219 |
T |
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| Q |
117 |
cggc |
120 |
Q |
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|||| |
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| T |
19220 |
cggc |
19223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 125 - 293
Target Start/End: Complemental strand, 14820262 - 14820094
Alignment:
| Q |
125 |
gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt |
224 |
Q |
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| T |
14820262 |
gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt |
14820163 |
T |
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| Q |
225 |
ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccggataaggttcgagtattgtc |
293 |
Q |
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| T |
14820162 |
ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatattcggataaggctcgagtattgtc |
14820094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 14820592 - 14820489
Alignment:
| Q |
17 |
acgagtcaacacattttaggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta |
116 |
Q |
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| T |
14820592 |
acgagtcaacacattttaggaagttgtgcaactcgccccaaactcgctcatggcgagttggctctggagtatacacgctttaagcgagtttactcgctta |
14820493 |
T |
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| Q |
117 |
cggc |
120 |
Q |
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|||| |
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| T |
14820492 |
cggc |
14820489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 32146129 - 32146015
Alignment:
| Q |
164 |
acatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgttt-caaaagtactgaacttgaatcttcagaa |
262 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | | ||| ||| ||| | ||||||||||||||||||||| |
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| T |
32146129 |
acatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tctccctcatttccaagaatactgaacttgaatcttcagag |
32146031 |
T |
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| Q |
263 |
cttcatatccggataa |
278 |
Q |
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| T |
32146030 |
cttcatatccggataa |
32146015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 21333095 - 21332953
Alignment:
| Q |
147 |
ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactga |
246 |
Q |
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||||||||||| || | ||| |||||| ||| |||||||||||||| | ||||||| | |||||||||||||||| || |||| ||||| || | ||| |
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| T |
21333095 |
ttatatgtatacctcagacagacattactgcgtaacataaatcatgtggaatccttgactcacatgacgacatctcattcacttgcttcaagagcattga |
21332996 |
T |
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| Q |
247 |
acttgaatcttcagaacttcatatccggataaggttcgagtat |
289 |
Q |
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||||||||| ||||||||| |||||| ||||||| |||||||| |
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| T |
21332995 |
acttgaatcctcagaactttatatccagataaggctcgagtat |
21332953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 289
Target Start/End: Complemental strand, 1212 - 1070
Alignment:
| Q |
147 |
ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactga |
246 |
Q |
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||||||||||| || | ||| |||||| |||||||||||||||||| | ||| ||| | |||||||||||||||| || |||| ||||| || | ||| |
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| T |
1212 |
ttatatgtatacctcagacagacattactgcataacataaatcatgtggaatcgttgactcacatgacgacatctcattcacttgcttcaagagcattga |
1113 |
T |
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| Q |
247 |
acttgaatcttcagaacttcatatccggataaggttcgagtat |
289 |
Q |
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| T |
1112 |
acttgaatcctcaaaactttatatccagataaggctcgagtat |
1070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 32146513 - 32146411
Alignment:
| Q |
15 |
ggacgagtcaacacatttt-aggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgc |
113 |
Q |
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||||||||||||||||||| || |||||||||||||| ||| |||| ||| |||||||||||||| || ||| | || || |||| |||| ||||||| |
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| T |
32146513 |
ggacgagtcaacacatttttagaaagttgtgcaactcaccccaagcccgcctatggcgagttggctctgaagtttgcacgccttaaatgagtatactcgc |
32146414 |
T |
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| Q |
114 |
tta |
116 |
Q |
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||| |
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| T |
32146413 |
tta |
32146411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 15559742 - 15559659
Alignment:
| Q |
37 |
aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgcttacggc |
120 |
Q |
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||||||||| |||||||| |||||||| ||||| |||||||| |||||| | || || ||||| ||||||||||||||||||| |
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| T |
15559742 |
aagttgtgcgactcgccccaagctcgccaatggctagttggctctggagtttgcacgccttaagtgagtttactcgcttacggc |
15559659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 15593325 - 15593246
Alignment:
| Q |
37 |
aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta |
116 |
Q |
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| T |
15593325 |
aagttgtgaaacttgccccaggctcgcttatggtgagttggctttggagtttacacgctttaagcgagtttacttgctta |
15593246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 12058571 - 12058456
Alignment:
| Q |
176 |
gcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccgga |
275 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||| ||||||||| || ||||| | ||| | | |||| ||||||||| |||| |||||| || | |
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| T |
12058571 |
gcataacataaatcatgtaggatccttgatccacatggcgacatctcgttcccttgctccaagaatgatgaatctgaatcttc-gaacatcatattcgaa |
12058473 |
T |
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| Q |
276 |
taaggttcgagtattgt |
292 |
Q |
| |
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||| | ||||||||||| |
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| T |
12058472 |
taatgctcgagtattgt |
12058456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 12058935 - 12058856
Alignment:
| Q |
37 |
aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta |
116 |
Q |
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|||||||| |||||||| |||||| | |||||||||||||| |||||| | || || ||||| ||||||||||||||| |
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| T |
12058935 |
aagttgtgtgactcgccccaagctccccaatggcgagttggctctggagtttgcacgccttaagtgagtttactcgctta |
12058856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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