View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0794_low_15 (Length: 328)

Name: NF0794_low_15
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0794_low_15
NF0794_low_15
[»] chr4 (18 HSPs)
chr4 (1-276)||(3919717-3919992)
chr4 (1-276)||(3817472-3817747)
chr4 (1-276)||(3932941-3933216)
chr4 (7-100)||(3987059-3987152)
chr4 (2-91)||(3810089-3810178)
chr4 (1-72)||(3801678-3801749)
chr4 (171-270)||(3986877-3986976)
chr4 (177-266)||(3809902-3809991)
chr4 (203-276)||(4009872-4009945)
chr4 (7-84)||(4010076-4010153)
chr4 (193-276)||(4002175-4002258)
chr4 (2-91)||(4025299-4025388)
chr4 (203-276)||(4218519-4218592)
chr4 (192-276)||(3801462-3801546)
chr4 (1-72)||(4218735-4218806)
chr4 (186-276)||(4025102-4025192)
chr4 (186-231)||(3954565-3954610)
chr4 (2-91)||(4002372-4002461)
[»] chr5 (2 HSPs)
chr5 (186-276)||(13397826-13397916)
chr5 (2-91)||(13398023-13398112)
[»] chr8 (3 HSPs)
chr8 (195-234)||(7075417-7075456)
chr8 (198-234)||(7023411-7023447)
chr8 (197-231)||(7036508-7036542)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 3919717 - 3919992
Alignment:
Q  1 cggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3919717 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3919816  T
Q  101 gcacatggtggagttggatgtttaaaggaaagcattttatctgaactattgaaagagtctgtgaaagaactgtccggtgatataaagagacggattagcc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3919817 gcacatggtggagttggatgtttaaaggaaagccttttatctgaactattgaaagagtctgtgaaagaattgtccggtgatataaagagacggattagcc 3919916  T
Q  201 gcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3919917 gcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattg 3919992  T

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Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3817747 - 3817472
Alignment:
Q  1 cggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817747 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3817648  T
Q  101 gcacatggtggagttggatgtttaaaggaaagcattttatctgaactattgaaagagtctgtgaaagaactgtccggtgatataaagagacggattagcc 200  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3817647 acacatggtggagttggatgtttaaaggaaagccttttatctgaactattgaaagagtctgtgaaagaattgtccggtgatataaagagacggattagcc 3817548  T
Q  201 gcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3817547 gcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattg 3817472  T

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Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 3932941 - 3933216
Alignment:
Q  1 cggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932941 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3933040  T
Q  101 gcacatggtggagttggatgtttaaaggaaagcattttatctgaactattgaaagagtctgtgaaagaactgtccggtgatataaagagacggattagcc 200  Q
    |||||||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||| ||| |||  ||||||||||  |||    
T  3933041 gcacatggtgggattggatctttaaaggaaagccttttatctgaactattgaaagaatctgttaaagaattgtccagtggtattgagagacggatcggcc 3933140  T
Q  201 gcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||| |||| |||||    
T  3933141 gcatgaaagttcttattgttcttgatgatgtcaatgaaacagatctgctagagatgttatttggatctcttgattg 3933216  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 3987152 - 3987059
Alignment:
Q  7 tggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||| || || ||||||||||||||||| |||| |||||| ||||||| |||||||    
T  3987152 tggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgttttttggcaaaggtgagtgaaaagttaaaa 3987059  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 3810178 - 3810089
Alignment:
Q  2 ggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    |||| ||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||||||||||||||||||| ||||||    
T  3810178 ggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaa 3810089  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3801749 - 3801678
Alignment:
Q  1 cggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgttt 72  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| |  || |||||||||||||||||    
T  3801749 cggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttt 3801678  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 3986976 - 3986877
Alignment:
Q  171 tgtccggtgatataaagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactct 270  Q
    ||||| |||||||  ||||||| ||| | |||||||||||||||||| ||||||||||||| |||||   ||||||||||||||||||||| | ||||||    
T  3986976 tgtccagtgatattgagagacgaattggacgcatgaaggttcttatcattcttgatgatgttaaggacgaagatcagctagagatgttattcgaaactct 3986877  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 3809991 - 3809902
Alignment:
Q  177 gtgatataaagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaa 266  Q
    |||||||  |||| |||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||| || |  ||||||||||    
T  3809991 gtgatattgagaggcggattggccgcatgaaggttcttatcgttcttgatgacgtcaagggtacagatcagctggaaaaattatttggaa 3809902  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 4009945 - 4009872
Alignment:
Q  203 atgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    |||||||||||||| |||||||||||||| |||||   || ||||||||||||||||||| ||||||| |||||    
T  4009945 atgaaggttcttattgttcttgatgatgttaaggaagaaggtcagctagagatgttatttagaactcttgattg 4009872  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 4010153 - 4010076
Alignment:
Q  7 tggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt 84  Q
    |||||||||||||||||||| |||||| |||| ||||||| | || || ||||| ||||||||||| |||||||||||    
T  4010153 tggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgttttttggaaaaggt 4010076  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 4002258 - 4002175
Alignment:
Q  193 gattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    |||| |||| |||||||||||||| |||||||||||||| |||||   || |||  |||||||||||||||||||||| |||||    
T  4002258 gattggccgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcaaatagagatgttatttggaactcttgattg 4002175  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4025388 - 4025299
Alignment:
Q  2 ggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    |||| |||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| |||| |||||| ||||||    
T  4025388 ggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaaaggtaagtgaa 4025299  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 4218592 - 4218519
Alignment:
Q  203 atgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    |||||||||||||| |||||||||||| | |||||   || || |||||||||||||||||||||||| |||||    
T  4218592 atgaaggttcttattgttcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattg 4218519  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 3801546 - 3801462
Alignment:
Q  192 ggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||| |||| |||||||||||||| | |||||||||| | |||||   || || |||||||||||||||||||||||| |||||    
T  3801546 ggattggccgtatgaaggttcttattgatcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattg 3801462  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4218806 - 4218735
Alignment:
Q  1 cggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgttt 72  Q
    ||||| ||||||||||||||||||| ||||| |||||  ||||| | |||| || |||||||||||||||||    
T  4218806 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttt 4218735  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 4025192 - 4025102
Alignment:
Q  186 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||| ||||| |||| |||||||| ||||| ||||||||||| || |||||   || |||| ||||||||||||||||||| || |||||    
T  4025192 agagaaggattggccgtatgaaggtccttattgttcttgatgacgttaaggaagaaggtcagatagagatgttatttggaacacttgattg 4025102  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 3954565 - 3954610
Alignment:
Q  186 agagacggattagccgcatgaaggttcttatcgttcttgatgatgt 231  Q
    ||||| ||||| |||| |||||||||||||| ||||||||||||||    
T  3954565 agagaaggattggccgtatgaaggttcttattgttcttgatgatgt 3954610  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4002461 - 4002372
Alignment:
Q  2 ggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    |||| |||||||||||||||||| |||||| | |||| || || | | || || ||||| |||| |||||| ||||||||||| ||||||    
T  4002461 ggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgttttttggaaaaggtaagtgaa 4002372  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 13397916 - 13397826
Alignment:
Q  186 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 276  Q
    ||||| ||||| |||  |||||||||||||| |||||||||||||| | |||   || |||||| |||||||||||||||||||| |||||    
T  13397916 agagaaggattggccatatgaaggttcttattgttcttgatgatgttacggaagaaggtcagctggagatgttatttggaactcttgattg 13397826  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 13398112 - 13398023
Alignment:
Q  2 ggtactggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    |||| ||| |||||||||||||| |||||||| ||||  |||| | |||| || ||||| || |||||||| |||| |||||| ||||||    
T  13398112 ggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaaaggtgagtgaa 13398023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 7075456 - 7075417
Alignment:
Q  195 ttagccgcatgaaggttcttatcgttcttgatgatgtcaa 234  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  7075456 ttagccgcatgaaggttcttattgttcttgatgatgtcaa 7075417  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 7023411 - 7023447
Alignment:
Q  198 gccgcatgaaggttcttatcgttcttgatgatgtcaa 234  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7023411 gccgcatgaaggttcttattgttcttgatgatgtcaa 7023447  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 7036508 - 7036542
Alignment:
Q  197 agccgcatgaaggttcttatcgttcttgatgatgt 231  Q
    |||||||||||||||||||| ||||||||||||||    
T  7036508 agccgcatgaaggttcttattgttcttgatgatgt 7036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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