View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0794_low_16 (Length: 321)
Name: NF0794_low_16
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_16 |
 | |
|
| [»] scaffold0529 (1 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 5028652 - 5028424
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028652 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
5028553 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028552 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
5028453 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5028452 |
taacccctgtggttctagactttcttggc |
5028424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 34172910 - 34172682
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34172910 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
34172811 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34172810 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcacgaattgacctct |
34172711 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34172710 |
taacccctgtggttctagactttcttggc |
34172682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 27320866 - 27320638
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27320866 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
27320767 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27320766 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagttccaacatttccaacctcatgaattgacctct |
27320667 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27320666 |
taacccctgtggttctagactttcttggc |
27320638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0529
Description:
Target: scaffold0529; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 10041 - 10269
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10041 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
10140 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10141 |
taatttagagtaacatcagtctcatcatgttctttcatagcttaagtcttgttcactgactgttgagtcccaacatttccaacctcatgaatttacctct |
10240 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
10241 |
taacccctgtggttctagactttattggc |
10269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 8839 - 9067
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8839 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
8938 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8939 |
taatttagagtaacatcagtctcatcatgttctttcatagtttaagtcttgttcactgactgttgagtcccaacattttcaacctcatgaattgacctct |
9038 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |
|
|
| T |
9039 |
taacccttgtggttctagagtttcttggc |
9067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 14875836 - 14875608
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
14875836 |
acatcaccaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttaattttacagtagataaccaaaata |
14875737 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14875736 |
taatttagagtaacatcagtgtcatcatgttctttcatagcttaagtcttgttcactgactgttgagtcccaacatttccagcctcatgaattgacctct |
14875637 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14875636 |
taacccctgtggttctagactttcttggc |
14875608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 38319 - 38546
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38319 |
acatcaccaaaagataattaagactaatttagagcccttaacctaaacataagcaaaataaaaataagaatacttgatattacat-agataaccaaaata |
38417 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
||||| |||||||||||| |||||||||| | ||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38418 |
taattaagagtaacatcagtctcatcatgatccttcatagcttaagtcttgttcactgactattgagtcccaacattttcaacctcatgaattgacctcc |
38517 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38518 |
taacccctgtggttctagactttcttggc |
38546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 1357 - 1135
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || ||||| || |||||||||||||||| |||||||||| |
|
|
| T |
1357 |
acatcatcaaaagataattaagactaatttagagcacttaaactaaacataagcaaaataaaaataagaata-ttgatattacattagacaaccaaaata |
1259 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
||||| |||||||||||| |||||||||| | |||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1258 |
taattaagagtaacatcagtctcatcatgatccttcataacttaa-----gttcactgactgttgagtcccaacatttccagcctcatgaattgacctct |
1164 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1163 |
taacccctgtggttctagactttcttggc |
1135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 91 - 319
Target Start/End: Complemental strand, 5980 - 5758
Alignment:
| Q |
91 |
acatcatcaaaagataattaagtctaatttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacattagataaccaaaata |
190 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || ||||| || |||||||||||||||| |||||||||| |
|
|
| T |
5980 |
acatcatcaaaagataattaagactaatttagagcacttaaactaaacataagcaaaataaaaataagaata-ttgatattacattagacaaccaaaata |
5882 |
T |
|
| Q |
191 |
taatttagagtaacatcattctcatcatgttttttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctct |
290 |
Q |
| |
|
||||| |||||||||||| |||||||||| | |||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5881 |
taattaagagtaacatcagtctcatcatgatccttcataacttaa-----gttcactgactgttgagtcccaacatttccagcctcatgaattgacctct |
5787 |
T |
|
| Q |
291 |
taacccctgtggttctagactttcttggc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5786 |
taacccctgtggttctagactttcttggc |
5758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 126 - 313
Target Start/End: Complemental strand, 7986769 - 7986573
Alignment:
| Q |
126 |
acttaacctaaa-cataagcaaaatataattaagagtacttgatattacattagataaccaaaatataatttagagtaacatcattctcatcatgtt--t |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| ||||||| | | |||||||||||||| |||||||||||| |||||||||| | | |
|
|
| T |
7986769 |
acttaacctaaaacataagcaaaatataattaggagtacttgacattacatcacaacaccaaaatataattaagagtaacatcagtctcatcatgatcct |
7986670 |
T |
|
| Q |
223 |
t------ttcataggttaagtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctcttaacccctgtggttctagacttt |
313 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||| ||||||| ||||||||||||| ||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
7986669 |
tcatagcttcatagcttaagtcttgttcactgactgttgtgtcccaatgtttccaacctcatcaattgtccttttaactcctgtggttctagacttt |
7986573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 17505929 - 17505985
Alignment:
| Q |
118 |
tttagagcacttaacctaaacataagcaaaatataattaagagtacttgatattacat |
175 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
17505929 |
tttagagtacttaacctaa-cataaccaaaatatcattaagagtacttaatattacat |
17505985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 17506039 - 17506071
Alignment:
| Q |
232 |
ttaagtcttgttcactgattgttgagtcccaac |
264 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
17506039 |
ttaagtcttgttcactgactgttgagtcccaac |
17506071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 32972635 - 32972556
Alignment:
| Q |
236 |
gtcttgttcactgattgttgagtcccaacatttccaacctcatgaattgacctcttaacccctgtggttctagactttct |
315 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32972635 |
gtcttgttcacagactgttgagtaccaacatttccaacctcattaattgacctcttaacccctgttgttctagactttct |
32972556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 577 times since January 2019
Visitors: 5845