View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_23 (Length: 287)
Name: NF0794_low_23
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_23 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 8528943 - 8528765
Alignment:
| Q |
59 |
tcatcaggtttgttgtattaaattttctcgatannnnnnnnnaccatctgaagtctgtctgtttgtttattgagatagtgattttgcatgtcagagctgt |
158 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8528943 |
tcatgaggtttgttgtattaaattttctcgatatttttttttaccatctgaagtctgtctgtttgtttattgagatagtgattttgcatgtcagaactgt |
8528844 |
T |
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| Q |
159 |
taaccatgccaaaaagtatactatactgaactactacttcagcctcgagaaatataggggttttgcatcaaactggtct |
237 |
Q |
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| T |
8528843 |
taaccatgtcaaaaagtatactatactgaactactacttcagcctcgagaaatataggggttttgcatcaaactggtct |
8528765 |
T |
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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 973889 - 973749
Alignment:
| Q |
101 |
accatctgaagtctgtctgtttgtttattgagatagtgattttgcatgtcagagctgttaaccatgccaaaaagtatacta----tactgaactactact |
196 |
Q |
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| T |
973889 |
accatctgaagtctgtctacttgtttattgagatagtgattttgcatgtcagaactgttaaccatgccaaacagtatgctacactcactgaactactact |
973790 |
T |
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| Q |
197 |
tcagcctcgagaaatataggggttttgcatcaaactggtct |
237 |
Q |
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| T |
973789 |
tcagcctcaagaaatataggagttttgcatcaaactggtct |
973749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 8968 - 8858
Alignment:
| Q |
101 |
accatctgaagtctgtctgtttgtttattgagatagtgattttgcatgtcagagctgttaaccatgccaaaaagtatactatactgaactactacttcag |
200 |
Q |
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| T |
8968 |
accatctgaagtcaatctacttgtttattgagatagtgattttgcctgttaggacagttaaccatgtaaaaaagtatgctacactgaaccactacttcag |
8869 |
T |
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| Q |
201 |
cctcgagaaat |
211 |
Q |
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|||| |||||| |
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| T |
8868 |
cctcaagaaat |
8858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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