View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0794_low_24 (Length: 276)
Name: NF0794_low_24
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_24 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 25808465 - 25808679
Alignment:
| Q |
34 |
ctgtggcggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttga |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25808465 |
ctgtggcggtgaaaacagttgttgtgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttga |
25808564 |
T |
|
| Q |
134 |
ctatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcct |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
25808565 |
ctatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcct |
25808664 |
T |
|
| Q |
234 |
gctgaaggtgagtgt |
248 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25808665 |
gctgaaggtgagtgt |
25808679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 5447347 - 5447133
Alignment:
| Q |
34 |
ctgtggcggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttga |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5447347 |
ctgtggcggtgaaaacagttgttgtgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttga |
5447248 |
T |
|
| Q |
134 |
ctatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcct |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5447247 |
ctatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcct |
5447148 |
T |
|
| Q |
234 |
gctgaaggtgagtgt |
248 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5447147 |
gctgaaggtgagtgt |
5447133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 5455904 - 5455695
Alignment:
| Q |
39 |
gcggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttgactatc |
138 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5455904 |
gcggtgaaatcagttgttgtgcagttgttggattcaggaaaccttgttgtgaaagatgcagacagcactcagaactttttgtgggaaagttttgattatc |
5455805 |
T |
|
| Q |
139 |
ctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcctgctga |
238 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||| | ||||||||||| |
|
|
| T |
5455804 |
ctggtaacactttccttgctggaatgaagctgaaaagtaacttagttacgggtccatatagatatctcacttcttggagaaaccctgatgatcctgctga |
5455705 |
T |
|
| Q |
239 |
aggtgagtgt |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
5455704 |
aggtgagtgt |
5455695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 5848071 - 5848274
Alignment:
| Q |
35 |
tgtggcggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttgac |
134 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5848071 |
tgtggcggtgaaatcagttattgtgcagttgttggattcaggaaaccttgttgggaaagatgcaaacagctctcagaactttttgtgggaaagttttgat |
5848170 |
T |
|
| Q |
135 |
tatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcctg |
234 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||| |
|
|
| T |
5848171 |
tatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctg |
5848270 |
T |
|
| Q |
235 |
ctga |
238 |
Q |
| |
|
|||| |
|
|
| T |
5848271 |
ctga |
5848274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 5801721 - 5801881
Alignment:
| Q |
88 |
tgaaagatgtaaacagcactcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttac |
187 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5801721 |
tgaaagatgcaaacggctctcagaactttttgtgggaaagttttgactatcctggtaacactttccttcctggaatgaagctgaaaagtaacttagttac |
5801820 |
T |
|
| Q |
188 |
tggtccatatagatatctcacatcttggaggagccctcaagatcctgctgaaggtgagtgt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5801821 |
tggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtgagtgt |
5801881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 40 - 248
Target Start/End: Complemental strand, 5491089 - 5490872
Alignment:
| Q |
40 |
cggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcac---------tcagaactttttgtgggaaagttt |
130 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||| | || | || |||||||||||||| |
|
|
| T |
5491089 |
cggtgaaatcagttattgtgcagctgttggattcaggaaaccttgttgtgaaagatgcaaacagcagcggtaagaatgaggatttattgtgggaaagttt |
5490990 |
T |
|
| Q |
131 |
tgactatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagat |
230 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
5490989 |
tgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggagaaaccctcaagat |
5490890 |
T |
|
| Q |
231 |
cctgctgaaggtgagtgt |
248 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5490889 |
cctgctgaaggtgagtgt |
5490872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 69 - 246
Target Start/End: Complemental strand, 5526704 - 5526527
Alignment:
| Q |
69 |
gattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagc |
168 |
Q |
| |
|
||||| ||||| ||||| ||| ||||| ||||| | ||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
5526704 |
gattcgggaaatcttgtcctgagagatgcaaacaactctcagaactttctgtgggaaagttttgactatcccggtaacactttccttgctggaatgaagc |
5526605 |
T |
|
| Q |
169 |
tgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcctgctgaaggtgagt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5526604 |
tgaaaagtaacttagttactggtccatatagatatctcacttcttggagaaaccctcaagatcctgctgaaggtgagt |
5526527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 5853403 - 5853585
Alignment:
| Q |
66 |
ttggattcaggaaaccttgttgtgaaagatgtaaacagcactcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatga |
165 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| || ||| | ||||| |||||||||||||||||||| ||||||||| ||| ||||||| | ||||||| |
|
|
| T |
5853403 |
ttggattcaggaaatcttgttttgaatgatacaatcagagcacagaattttttgtgggaaagttttgattatcctggtaacaatttccttgcgggaatga |
5853502 |
T |
|
| Q |
166 |
agctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcctgctgaaggtgagtgt |
248 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5853503 |
agctgaaaagtaatttagttactggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtgagtgt |
5853585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 5485582 - 5485451
Alignment:
| Q |
117 |
ttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttgga |
216 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5485582 |
ttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttgga |
5485483 |
T |
|
| Q |
217 |
ggagccctcaagatcctgctgaaggtgagtgt |
248 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
5485482 |
aaaaccctcaagatcctgctgaaggtgagtgt |
5485451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 5503827 - 5503685
Alignment:
| Q |
106 |
ctcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatct |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503827 |
ctcagaactttctgtgggaaagttttgactatcccggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatct |
5503728 |
T |
|
| Q |
206 |
cacatcttggaggagccctcaagatcctgctgaaggtgagtgt |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
5503727 |
cacatcttggaaagaccctcaagatcctgctgagggtgagtgt |
5503685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 246
Target Start/End: Complemental strand, 20344503 - 20344305
Alignment:
| Q |
57 |
ttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcac---------tcagaactttttgtgggaaagttttgactatcctggtgaca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| |||| | || | |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
20344503 |
ttgcagttgttggattcaggaaaccttgttgtaaaagatgcaaatagcagcagtgaggatgaggagtttttgtgggaaagctttgattatcctggtgaca |
20344404 |
T |
|
| Q |
148 |
ctttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaagatcctgctgaaggtgagt |
246 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | | || |||||||||||| |||||||| |
|
|
| T |
20344403 |
cgttgcttgctggaatgaagctgaaaagtaacttagtgactggtccatatagatatctcacttcttggagaacctctgaagatcctgctgtaggtgagt |
20344305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 5827336 - 5827553
Alignment:
| Q |
38 |
ggcggtgaaaacagttgttttgcagttgttggattcaggaaaccttgttgtgaaagatgtaaacagcactc---------agaactttttgtgggaaagt |
128 |
Q |
| |
|
|||||||||| ||||| || ||||| | |||||||| |||||||||||||||||||||| || ||| | | || | ||||||||||||||| |
|
|
| T |
5827336 |
ggcggtgaaatcagttattgtgcagcttttggattcgggaaaccttgttgtgaaagatgcaagcagaagttttaagaatgaggattttttgtgggaaagt |
5827435 |
T |
|
| Q |
129 |
tttgactatcctggtgacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaggagccctcaag |
228 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| | || ||| |
|
|
| T |
5827436 |
tttaattatcctggtgacactttccttgctggaatgaagctgagaagtaacttagttactggtccatatagatatctgacttcttggagatcctctgaag |
5827535 |
T |
|
| Q |
229 |
atcctgctgaaggtgagt |
246 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
5827536 |
atcctgctgacggtgagt |
5827553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 5485644 - 5485603
Alignment:
| Q |
64 |
tgttggattcaggaaaccttgttgtgaaagatgtaaacagca |
105 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
5485644 |
tgttagattcaggaaaccttgttttgaaagatgcaaacagca |
5485603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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