View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_25 (Length: 275)
Name: NF0794_low_25
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 38220565 - 38220756
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38220565 |
atcagtaacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggacgc |
38220664 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220665 |
tcaaaaccttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
38220756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 38238475 - 38238666
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38238475 |
atcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
38238574 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
38238575 |
tcaaaaccttccttcaacttgcactgtttagaatcataacaacataacaaacctcctttataatctggcctaatagaccttccatattcatc |
38238666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 38243420 - 38243604
Alignment:
| Q |
57 |
acatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaat |
156 |
Q |
| |
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||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38243420 |
acatcaattacatatatcttaagaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaac |
38243519 |
T |
|
| Q |
157 |
cttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
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|||||||||||||||||||| || | |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
38243520 |
cttccttcaacttgcactgtgtacaatcataacaacataaccaacctcctttataatctggccttatagaccttccatattcatc |
38243604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 38226946 - 38227137
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |
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| T |
38226946 |
atcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtagagacttctctttggaccc |
38227045 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||| |
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|
| T |
38227046 |
tcaaaaccttccttcaacttgcattgtgtatggtcataacaacataacaaacctcctttataatctggcccaatagaccttccatattcatc |
38227137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 38253676 - 38253867
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
38253676 |
atcagtaacatcaattatatatatcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtagaggtttctctttggaccc |
38253775 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
|||||| ||||||||||||||||| || || |||||||||||||| | ||||||||||||||| | ||||| |||||||| || ||||| |
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|
| T |
38253776 |
tcaaaaccttccttcaacttgcaccgtgtatgatcataacaacataacatacctcctttataatcaggccttacagaccttccgtactcatc |
38253867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 38214523 - 38214714
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||| |
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|
| T |
38214523 |
atcagtaacatcaattatatatatcttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatcttagatagagacttctctttggcccc |
38214622 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
|||||| |||||||||| || |||||| || | |||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||| |
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|
| T |
38214623 |
tcaaaaccttccttcaatttacactgtgtataatcataacaacataacaaacctccttcataatctgacctaatagaccttccatattcatc |
38214714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 38248563 - 38248752
Alignment:
| Q |
52 |
cagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctc |
151 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||||| || || || |
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|
| T |
38248563 |
cagtgacatcaattatatatatcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagtaaaggcttctcttaggtccttc |
38248662 |
T |
|
| Q |
152 |
aaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
||| ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||| || || ||||||| ||||| |
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|
| T |
38248663 |
gaaaccttccttcaacttgcaccgtgtagaatcataacaacataacaaacctcctttataatctggcctaatagattttccatactcatc |
38248752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 17455176 - 17455367
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||| ||| |||||||| |||||||||||||||||||| | ||||| | | || || ||||||||||| ||| |
|
|
| T |
17455176 |
atcagtaacatcaattatgtatgtcttaagaggaactataaattcatcccaatcaacccatttgattttgtatttcagataaagacttctctttggtccc |
17455275 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
| |||| |||||||||||||||| ||| || |||||||||||| | ||||||||||||||||| ||| ||| | ||||||||||||||| |
|
|
| T |
17455276 |
ttaaaaccttccttcaacttgcattgtgtattatcataacaacatgacaaacctcctttataatcagacattaaaggccttccatattcatc |
17455367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 17434076 - 17434267
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||| ||| |||| ||||||||||||||||||||||||||| |||||| | ||||| | | ||||| ||||||||||| ||| |
|
|
| T |
17434076 |
atcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccatttgattttgtatttcagatagagacttctctttggtccc |
17434175 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatc |
241 |
Q |
| |
|
|||||| || ||||||||||||| ||| || |||| ||||||| | ||| |||||||||||| | |||| | |||||||||||||| |
|
|
| T |
17434176 |
tcaaaacctaccttcaacttgcattgtgtattatcatgacaacatttcataccccctttataatctaaacttaaaggtcttccatattcatc |
17434267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 11462753 - 11462691
Alignment:
| Q |
47 |
atcatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaaccca |
109 |
Q |
| |
|
||||||||| |||||||||| || |||||| | ||||| | ||||||||||||||||||||| |
|
|
| T |
11462753 |
atcatcagtcacatcaagtaagtaaatcttaactggcaccacaaaatcatcccaatcaaccca |
11462691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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