View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_27 (Length: 254)
Name: NF0794_low_27
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 5572669 - 5572865
Alignment:
| Q |
5 |
cagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattt |
104 |
Q |
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| T |
5572669 |
cagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattt |
5572768 |
T |
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| Q |
105 |
tctcgctccaatgtcatgtagagcctggaatcaaatggaactaataaaccatcatattaaatatattgaaacaattagtgaaagcaagagtaaaaca |
201 |
Q |
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| T |
5572769 |
tctcgctccaatgtcatgtagagcctggaatcaaatggaactaataaacaatcatattaaatatattgaatcaattagtgaaagcaagagtaaaaca |
5572865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 5580488 - 5580623
Alignment:
| Q |
5 |
cagagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaagtgacggagtactgcttgaaagtcccaacccaactaacacatattt |
104 |
Q |
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| T |
5580488 |
cagagaacttattattgaaatgttccactagagatttaagcttggaaattaaaagtaacggagtgctgcctgaaagttccaacccaactaacacatattt |
5580587 |
T |
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| Q |
105 |
tctcgctccaatgtcatgtagagcctggaatcaaat |
140 |
Q |
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| T |
5580588 |
tcttgctccaatgtcatgtagagcctggaataaaat |
5580623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 5586079 - 5586122
Alignment:
| Q |
5 |
cagagaacttattattgaaatgttccactagagatttaagcttg |
48 |
Q |
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| T |
5586079 |
cagagaacttattattgaaatgatccactagagatttaagcttg |
5586122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 5575607 - 5575658
Alignment:
| Q |
7 |
gagaacttattattgaaatgttccactagagatttaagcttgtaattgaaaa |
58 |
Q |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaa |
5575658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 5592348 - 5592391
Alignment:
| Q |
5 |
cagagaacttattattgaaatgttccactagagatttaagcttg |
48 |
Q |
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| T |
5592348 |
cagagaacttattattgaaatgatccactaaagatttaagcttg |
5592391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 5575745 - 5575784
Alignment:
| Q |
85 |
aacccaactaacacatattttctcgctccaatgtcatgta |
124 |
Q |
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| T |
5575745 |
aaccctactaacacatattttctagctccaatgtcatgta |
5575784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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