View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_28 (Length: 251)
Name: NF0794_low_28
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 3073938 - 3073766
Alignment:
| Q |
57 |
atgatattacaccatgaaaagggttccaagggtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagcaattg |
156 |
Q |
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| T |
3073938 |
atgatattgcaccatgaaaagggttccaagagtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagcaattg |
3073839 |
T |
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| Q |
157 |
acttaaccattattcgccaccaaagtcccataaaaccaatcaacgttctatcaagaggagaaatatcattgat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073838 |
acttaaccattattcgccaccaaagtcccataaaaccaatcaacgttctatcaagaggagaaatatcattgat |
3073766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 27732308 - 27732130
Alignment:
| Q |
51 |
ggacaaatgatattacaccatgaaaagggttccaagggtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccag |
150 |
Q |
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| T |
27732308 |
ggacatatgatattgcaccatgaaaagggttccaagagtattcattcaccaaccacattcttggaacaatttcaatttcaagttggtattgcaccaccag |
27732209 |
T |
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| Q |
151 |
caattgacttaacc-attattcgccaccaaagtcccataaaaccaatcaacgttctatcaagaggagaaatatcattgat |
229 |
Q |
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| T |
27732208 |
ctattgacttaaccaagtattcgccaccaaagtcccataaaa-taaaaaaaaatctatcaggaggagaaatatcattgat |
27732130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 8611827 - 8611784
Alignment:
| Q |
17 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatga |
60 |
Q |
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| T |
8611827 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatga |
8611784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 8646823 - 8646866
Alignment:
| Q |
17 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatga |
60 |
Q |
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| T |
8646823 |
ttatgagtcatgtgtttattcaaattcaatagaaggacaaatga |
8646866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 21155759 - 21155578
Alignment:
| Q |
52 |
gacaaatgatattacaccatgaaaagggttccaagggtattcaatctccaaccacattcgtggaacaatttaaatttcaagttggtattgcacacccagc |
151 |
Q |
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|||| |||||||| ||| |||||||||||| ||| ||||||||| |||||||||| | | ||||||||| ||||||||||| ||||||||| ||||| |
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| T |
21155759 |
gacatatgatattgcactctgaaaagggttcgaagagtattcaattgccaaccacatccttcgaacaatttcaatttcaagttagtattgcaccaccagc |
21155660 |
T |
|
| Q |
152 |
aattgacttaacc-attattcgcc---accaaagtcccataaaaccaatcaacgttctatcaagaggagaaatatcattgat |
229 |
Q |
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|||||||||||| | |||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
21155659 |
gattgacttaaccaagtattcgccgctgccaaagtcccataaaaccaataaacgctctatcaggaggagaaatatcattgat |
21155578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 21249365 - 21249459
Alignment:
| Q |
51 |
ggacaaatgatattacaccatgaaaagggttccaagggtattcaatctccaaccacattcgtggaacaattt-aaatttcaagttggtattgcac |
144 |
Q |
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||||| |||||||| |||| ||| |||||| ||||| ||| ||||||||||||||||| | | ||| ||||| |||||||||||||||||||||| |
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| T |
21249365 |
ggacatatgatattgcaccgtgataagggtcccaagagtactcaatctccaaccacatcctttgaaaaatttcaaatttcaagttggtattgcac |
21249459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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