View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0794_low_33 (Length: 211)

Name: NF0794_low_33
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0794_low_33
NF0794_low_33
[»] scaffold0465 (1 HSPs)
scaffold0465 (25-116)||(11746-11837)
[»] scaffold0467 (1 HSPs)
scaffold0467 (25-115)||(12419-12508)
[»] chr3 (12 HSPs)
chr3 (25-115)||(5225176-5225266)
chr3 (28-116)||(15942921-15943009)
chr3 (25-102)||(6149176-6149253)
chr3 (29-97)||(25768959-25769029)
chr3 (28-75)||(18915652-18915699)
chr3 (29-75)||(16259075-16259121)
chr3 (47-116)||(8270745-8270813)
chr3 (47-116)||(13963701-13963769)
chr3 (32-81)||(15612749-15612798)
chr3 (47-116)||(30151083-30151151)
chr3 (28-75)||(30140422-30140469)
chr3 (32-99)||(22149074-22149143)
[»] chr8 (4 HSPs)
chr8 (28-116)||(21846867-21846955)
chr8 (29-102)||(9950908-9950981)
chr8 (29-75)||(16415991-16416037)
chr8 (29-75)||(24931509-24931555)
[»] chr2 (1 HSPs)
chr2 (25-116)||(22281816-22281907)
[»] chr1 (3 HSPs)
chr1 (29-116)||(20929165-20929252)
chr1 (27-100)||(20529181-20529254)
chr1 (47-116)||(20827571-20827639)
[»] scaffold0225 (1 HSPs)
scaffold0225 (25-116)||(27522-27613)
[»] scaffold1140 (1 HSPs)
scaffold1140 (29-102)||(731-804)
[»] scaffold0266 (1 HSPs)
scaffold0266 (25-102)||(5944-6021)
[»] scaffold0022 (1 HSPs)
scaffold0022 (27-116)||(7525-7614)
[»] scaffold0011 (2 HSPs)
scaffold0011 (29-102)||(72816-72889)
scaffold0011 (29-102)||(77197-77270)
[»] chr6 (12 HSPs)
chr6 (25-116)||(1660072-1660163)
chr6 (29-102)||(17787172-17787245)
chr6 (28-75)||(18836054-18836101)
chr6 (47-116)||(9480391-9480459)
chr6 (47-116)||(16646221-16646289)
chr6 (29-75)||(18578273-18578319)
chr6 (29-75)||(19985587-19985633)
chr6 (47-116)||(16378625-16378693)
chr6 (29-102)||(18421539-18421611)
chr6 (29-100)||(16104282-16104351)
chr6 (29-102)||(21411758-21411832)
chr6 (28-85)||(16235199-16235255)
[»] scaffold0021 (2 HSPs)
scaffold0021 (29-102)||(9297-9370)
scaffold0021 (39-83)||(76019-76064)
[»] scaffold0008 (2 HSPs)
scaffold0008 (25-97)||(130574-130646)
scaffold0008 (25-102)||(27871-27949)
[»] chr4 (3 HSPs)
chr4 (28-116)||(15000750-15000838)
chr4 (25-85)||(15138905-15138965)
chr4 (28-75)||(9293154-9293201)
[»] scaffold0610 (1 HSPs)
scaffold0610 (29-98)||(3016-3086)
[»] scaffold0162 (1 HSPs)
scaffold0162 (29-102)||(16929-17002)
[»] scaffold0615 (1 HSPs)
scaffold0615 (28-116)||(8479-8567)
[»] scaffold0302 (1 HSPs)
scaffold0302 (25-116)||(3536-3627)
[»] scaffold0673 (1 HSPs)
scaffold0673 (29-102)||(4461-4535)
[»] scaffold0028 (1 HSPs)
scaffold0028 (29-75)||(93682-93728)
[»] chr5 (3 HSPs)
chr5 (29-79)||(23509704-23509754)
chr5 (47-116)||(24585211-24585279)
chr5 (29-75)||(23505460-23505506)
[»] scaffold0124 (1 HSPs)
scaffold0124 (47-116)||(3917-3985)
[»] chr7 (6 HSPs)
chr7 (29-102)||(16574868-16574943)
chr7 (29-102)||(16590719-16590794)
chr7 (47-116)||(7827986-7828054)
chr7 (47-116)||(27103890-27103958)
chr7 (47-116)||(27174367-27174435)
chr7 (29-75)||(11284787-11284832)
[»] scaffold0269 (1 HSPs)
scaffold0269 (29-75)||(2494-2540)
[»] scaffold0102 (1 HSPs)
scaffold0102 (29-75)||(46324-46370)
[»] scaffold0462 (1 HSPs)
scaffold0462 (29-102)||(3851-3923)
[»] scaffold0335 (1 HSPs)
scaffold0335 (30-75)||(10636-10681)
[»] scaffold0141 (1 HSPs)
scaffold0141 (47-116)||(24651-24719)
[»] scaffold0139 (1 HSPs)
scaffold0139 (28-75)||(17588-17635)
[»] scaffold0066 (1 HSPs)
scaffold0066 (28-75)||(51842-51889)
[»] scaffold1486 (1 HSPs)
scaffold1486 (28-75)||(524-571)
[»] scaffold0023 (1 HSPs)
scaffold0023 (28-75)||(53851-53898)
[»] scaffold0244 (1 HSPs)
scaffold0244 (29-75)||(24806-24852)
[»] scaffold0120 (1 HSPs)
scaffold0120 (29-98)||(26322-26391)
[»] scaffold0138 (1 HSPs)
scaffold0138 (32-60)||(24793-24821)


Alignment Details
Target: scaffold0465 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 11746 - 11837
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||||||    
T  11746 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggtgagttggttgtgtagtgctgagatggcaggtggtcgtgatgatg 11837  T

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Target: scaffold0467 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 12419 - 12508
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgat 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  12419 agcttagtaccttcgacatttgctttgttgtgttgttt-cttatcggttagatggttgtgtagtgctgagatggcaggtggtcgtgatgat 12508  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 5225266 - 5225176
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgat 115  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  5225266 agcttagtaccttcgacatttgctttgctgtgttgatttcttatcggttagatggttgtgtagtgctgagatggcaggtggtcgtgatgat 5225176  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 15942921 - 15943009
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||| ||| |||||||    
T  15942921 ttagtaccttcgacatttgctttgttgtgttgtgttcttatcgatgagttggttgtgtagtgctgagatggcaggaggtcgtgatgatg 15943009  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 6149176 - 6149253
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||  |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  6149176 agcttagtaccttcagcatttgttttgttgtgttgttttcttattggttagttggttgtgtagtgctgagatggcagg 6149253  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 25769029 - 25768959
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgtt-ttcttatcggttagatgg-ttgtgtagtgctgagatg 97  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||    
T  25769029 tagtaccttcggcatttgctttgttgtgctgttgttcttatcggttagttggtttgtgtagtgctgagatg 25768959  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 18915699 - 18915652
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  18915699 ttagtaccttcgacatttgctttgttgtgctgttttcttatcgattag 18915652  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 16259121 - 16259075
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16259121 tagtaccttcggcatttgctttgttgtgctgttttcttatcggttag 16259075  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 8270745 - 8270813
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||||||||||||||||||| |||  | |||||||||| ||| |||||||    
T  8270745 ctttgttgtgttgttt-cttatcggttagatggttgtgtaatgcgaacatggcaggaggtcgtgatgatg 8270813  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 13963701 - 13963769
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| || ||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  13963701 ctttgttgtgttgttt-ctcatcggttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 13963769  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 15612798 - 15612749
Alignment:
Q  32 taccttcgacatttgctttgttgtgttgttttcttatcggttagatggtt 81  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  15612798 taccttcgacatttactttgttatgttgttttcttatcggttagttggtt 15612749  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 30151151 - 30151083
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  30151151 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 30151083  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 30140469 - 30140422
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||    
T  30140469 ttagtaccttcggcacttgctctgttgtgttgttttcttatcggttag 30140422  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 22149074 - 22149143
Alignment:
Q  32 taccttcgacatttgctttgttgtgttgtt-ttcttatcggttagatggtt-gtgtagtgctgagatggc 99  Q
    |||||| | |||||| ||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  22149074 tacctttggcatttgttttgttgtgatgttgttcttatcggttagttggtttgtgtagtgctgagatggc 22149143  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 21846867 - 21846955
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  21846867 ttagtaccttcgacatttgttttgttgtgtggttttcttatcggttagatggttgtgtagtgctgagatggctggaggtcgtgatgatg 21846955  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 9950908 - 9950981
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  9950908 tagtaccttcgacatttgctttgttgtgttgttttcttatcagtgagttggttgtgtagtgctgagatggcagg 9950981  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 16416037 - 16415991
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16416037 tagtaccttcggcatttgctttgttgtgctgttttcttatcggttag 16415991  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 24931509 - 24931555
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  24931509 tagtaccttcggcatttactttgttgtgctgttttcttatcggttag 24931555  T

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Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 22281907 - 22281816
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||| ||| |||||||    
T  22281907 agcttagtaccttcgacatttgctttgatgtgttgttttcttatcggtgagttggttgtgtagtgctgatatggcaggaggtcgtgatgatg 22281816  T

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Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 20929252 - 20929165
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||||||    
T  20929252 tagtaccttcgacatttgctttgttgtgttgttttcttatcggtgagttggttgtgtagtgctgagatggcaggtggtcgtgatgatg 20929165  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 20529254 - 20529181
Alignment:
Q  27 cttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggca 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || || || ||||||||||||||||||    
T  20529254 cttagtaccttcgacatttgctttgttgtattgttttcttatcggtgagttgcttatgtagtgctgagatggca 20529181  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 20827571 - 20827639
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  20827571 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 20827639  T

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Target: scaffold0225 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 27613 - 27522
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||| |||||||||||||| ||| |||||||    
T  27613 agcttagtaccttcgacatttgcttcgttgtgttgtttccttatcggtgagttggttgtgtagtgatgagatggcaggaggtcgtgatgatg 27522  T

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Target: scaffold1140 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1140
Description:

Target: scaffold1140; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 804 - 731
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  804 tagtaccttcgacatttgctttgttgtgttgttttcttatcagtgagttggttgtgtagtgctgagatggcagg 731  T

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Target: scaffold0266 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5944 - 6021
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  5944 agcttagttccttcgacattagctttgttgtgttgttttcttatcggtgagttggttgtgtagtgctgagatggcagg 6021  T

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Target: scaffold0022 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 7525 - 7614
Alignment:
Q  27 cttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||||||||||||||||||||||| |||||| || || | |||||||||||||||||||||||||| ||| |||||||    
T  7525 cttagtaccttcgacatttgctttgttgtgttgtttccttatcagtgagttagttgtgtagtgctgagatggcaggaggtcgtgatgatg 7614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 72816 - 72889
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  72816 tagtaccttcgacattttctttgttgtgttgttttcttatcggtgagttggttgtgtagtgctgagatggcagg 72889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 77197 - 77270
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  77197 tagtaccttcgacattttctttgttgtgttgttttcttatcggtgagttggttgtgtagtgctgagatggcagg 77270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 1660072 - 1660163
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| || || ||||||||||||| |||||||||||||| ||| |||||||    
T  1660072 agcttagtaccttcgacattttctttgttgtgttgtttccttatcagtgagttggttgtgtagtgttgagatggcaggaggtcgtgatgatg 1660163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 17787245 - 17787172
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||    
T  17787245 tagtaccttcgacatttgctttgttgtgttgttttcttagcagtgagttggttgtgtagtgctgagatggcagg 17787172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 18836054 - 18836101
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18836054 ttagtaccttcgacagttgctttgttgtgttgttttcttatcggttag 18836101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 9480391 - 9480459
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  9480391 ctttgttgtgttgttt-cttatcggttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 9480459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 16646221 - 16646289
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  16646221 ctttgttgtgttgttt-cttatcggttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 16646289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 18578319 - 18578273
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  18578319 tagtaccttcggcatttgctttgttgtgttgttttcttgtcggttag 18578273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 19985587 - 19985633
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  19985587 tagtaccttcggcatttgctttgttgtgctgttttcttatcggttag 19985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 16378625 - 16378693
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  16378625 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 16378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 18421611 - 18421539
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||| |||||||||||||||| || ||||||| | || || ||||||||||||| ||||||||||||    
T  18421611 tagtaccttcggcatttgctttgttgtgctg-tttcttaccagtgagttggttgtgtagtgttgagatggcagg 18421539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 16104351 - 16104282
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggca 100  Q
    ||||||||||||||||||||| |||||| ||||| ||||| || ||| ||||||||||||||||| ||||||    
T  16104351 tagtaccttcgacatttgctt-gttgtgatgttt-cttattggctagttggttgtgtagtgctgaaatggca 16104282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 21411758 - 21411832
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgtt-ttcttatcggttagatgg-ttgtgtagtgctgagatggcagg 102  Q
    ||||||||||| |||||| |||||||||||||| ||||||||| |||| ||| |||||| ||||||||||||||||    
T  21411758 tagtaccttcggcatttggtttgttgtgttgttattcttatcgattagttggtttgtgt-gtgctgagatggcagg 21411832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 16235255 - 16235199
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgt 85  Q
    |||||||||||| |||||||||||||||| | ||||||||||| |||| |||||||||    
T  16235255 ttagtaccttcggcatttgctttgttgtgctattttcttatcgattag-tggttgtgt 16235199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 9370 - 9297
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9370 tagtagcttcggcatttgctttgttgtgttgttttcttatcggttagttggttgtgtagtgctgatatggcagg 9297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 76064 - 76019
Alignment:
Q  39 gacatttgctttgttgtg-ttgttttcttatcggttagatggttgt 83  Q
    |||||||||||||||||| |||||||||||||||| || |||||||    
T  76064 gacatttgctttgttgtgattgttttcttatcggtgagttggttgt 76019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 130574 - 130646
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatg 97  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||    
T  130574 agcttagtaccttcgacattagctttgttgtgttattttcttatcggtgagttggttgtgtagtgctgagatg 130646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 27949 - 27871
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtg-ttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||    
T  27949 agcttagtaccttcggcatttgctttgttgtgattgttttcttattggtgagttggttgtgtagtgctgagatggcagg 27871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 15000838 - 15000750
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    ||||||||||||||||||||||||||||||||||| |||||  || || ||||||| |||||||||||||||||||| ||| |||||||    
T  15000838 ttagtaccttcgacatttgctttgttgtgttgtttccttattagtgagttggttgtatagtgctgagatggcaggaggtcgtgatgatg 15000750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 15138905 - 15138965
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgt 85  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||    
T  15138905 agcttagtaccttcggcatttgctttgttgtgttgttttcgtatcggttagtgggttgtgt 15138965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 9293201 - 9293154
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  9293201 ttagaaccttcggcatttgctttgttgtgctgttttcttatcggttag 9293154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 3016 - 3086
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgtt-ttcttatcggttagatggttgtgtagtgctgagatgg 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  3016 tagtaccttcgacatttgctttgttgtgttgttattcttatcggttagttggatgtgtagtgctgagatgg 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 17002 - 16929
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    |||||||||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||||||||    
T  17002 tagtaccttcgacatttgctttgttgggttgttttcttatcagtaagttggttgtgtagagctgagatggcagg 16929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 8479 - 8567
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||| ||||||| |||||||| |||||||||||| || || |||||||||||||||||||||||||| | ||| |||||||    
T  8479 ttagtaccttcggcatttgccttgttgtgatgttttcttatcagtgagttggttgtgtagtgctgagatggcaggtggtcgtgatgatg 8567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 3627 - 3536
Alignment:
Q  25 agcttagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||||  | ||||| |||||||||||||||||||| | ||| |||||||    
T  3627 agcttagtaccttcgaaatttggtttgttgtgtcgttttcttatcggtgtgttggttatgtagtgctgagatggcaggtggtcgtgatgatg 3536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 4461 - 4535
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtg-ttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    |||||||||||||||||||||||||||  |||||||||||||||| || |||||||| |||||||||||||||||    
T  4461 tagtaccttcgacatttgctttgttgtaattgttttcttatcggtgagttggttgtgcagtgctgagatggcagg 4535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 93682 - 93728
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  93682 tagtaccttcggcatttgctttgttgtgttgttttcttatcggttag 93728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 23509754 - 23509704
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatgg 79  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  23509754 tagtaccttcgacatttactttgttgtgttgttttcttatcggtgagatgg 23509704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 24585279 - 24585211
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  24585279 ctttgttgtgttgttt-cttatcggttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 24585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 23505506 - 23505460
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||    
T  23505506 tagtaccttcaacatttgcgttgttgtgctgttttcttatcggttag 23505460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 3917 - 3985
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  3917 ctttgttgtgttgttt-cttatcggttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 3985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 16574868 - 16574943
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgtt-gttttcttatcggttagatgg-ttgtgtagtgctgagatggcagg 102  Q
    ||||||||||| |||||||||| ||||||| || ||||||||| |||| ||| |||||||||||||||||||||||    
T  16574868 tagtaccttcggcatttgctttattgtgttggtattcttatcgattagttggtttgtgtagtgctgagatggcagg 16574943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 16590794 - 16590719
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgtt-ttcttatcggttagatggtt-gtgtagtgctgagatggcagg 102  Q
    ||||||||||| |||||||||| |||||||| | ||||||||| |||| ||||| |||||||||||||||||||||    
T  16590794 tagtaccttcggcatttgctttattgtgttggtattcttatcgattagttggtttgtgtagtgctgagatggcagg 16590719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 7828054 - 7827986
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  7828054 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 7827986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 27103890 - 27103958
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  27103890 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 27103958  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 27174435 - 27174367
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  | |||||||||| ||| |||||||    
T  27174435 ctttgttgtgttgttt-cttatcgtttagatggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 27174367  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 11284832 - 11284787
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  11284832 tagtaccttcgacatttgctttgttgtgctg-tttcttatcggttag 11284787  T

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Target: scaffold0269 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 2540 - 2494
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  2540 tagtaccttcggcatttgttttgttgtgttgttttcttatcggttag 2494  T

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Target: scaffold0102 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 46324 - 46370
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  46324 tagtaccttcggcatttgctttgttgtgctgttttcttatcggttag 46370  T

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Target: scaffold0462 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 3923 - 3851
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcagg 102  Q
    |||||||||| ||||||| |||||||||  |||| |||||| | ||| ||||||||||||||||||||||||||    
T  3923 tagtaccttcaacatttgttttgttgtgccgttt-cttatcagctagttggttgtgtagtgctgagatggcagg 3851  T

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Target: scaffold0335 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 10636 - 10681
Alignment:
Q  30 agtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
T  10636 agtaccttcggcatttgctttgttgtgctgttttcttatcggttag 10681  T

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Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 24719 - 24651
Alignment:
Q  47 ctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatggcaggagttcgagatgatg 116  Q
    |||||||||||||||| ||||||||||||| |||||||||||||  | |||||||||| ||| |||||||    
T  24719 ctttgttgtgttgttt-cttatcggttagagggttgtgtagtgcgaacatggcaggaggtcgtgatgatg 24651  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 17588 - 17635
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||    
T  17588 ttagtaccttcggcacttgctttgttgtgctgttttcttatcggttag 17635  T

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Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 51889 - 51842
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  51889 ttagtactttcggcatttgctttgttgtgttgttttcttatcagttag 51842  T

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Target: scaffold1486 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 571 - 524
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||||| || ||||||||||||| |||||||||| |||||||    
T  571 ttagtaccttcggcacttgctttgttgtgctgttttcttagcggttag 524  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 53851 - 53898
Alignment:
Q  28 ttagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    |||||||||||| || ||||||||||||| |||||||||| |||||||    
T  53851 ttagtaccttcggcacttgctttgttgtgctgttttcttagcggttag 53898  T

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Target: scaffold0244 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 24806 - 24852
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttag 75  Q
    ||||||| ||||||| |||||||||||| |||||||||| |||||||    
T  24806 tagtaccctcgacatctgctttgttgtgctgttttcttagcggttag 24852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 26391 - 26322
Alignment:
Q  29 tagtaccttcgacatttgctttgttgtgttgttttcttatcggttagatggttgtgtagtgctgagatgg 98  Q
    ||||||||||||||||| |||||||||| |  ||||||||  || || ||||| | ||||||||||||||    
T  26391 tagtaccttcgacattttctttgttgtgctactttcttattagtgagttggttttatagtgctgagatgg 26322  T

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Target: scaffold0138 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 24793 - 24821
Alignment:
Q  32 taccttcgacatttgctttgttgtgttgt 60  Q
    |||||||||||||||||||||||||||||    
T  24793 taccttcgacatttgctttgttgtgttgt 24821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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