View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_4 (Length: 489)
Name: NF0794_low_4
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 32 - 420
Target Start/End: Complemental strand, 42163035 - 42162647
Alignment:
| Q |
32 |
caacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatgtgaagtgtgtggagtttc |
131 |
Q |
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| T |
42163035 |
caacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatgtgaagtgtgtggagtttc |
42162936 |
T |
|
| Q |
132 |
ttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggccttcaagaggccgtggat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162935 |
ttgcactggtgaaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggccttcaagaggccgtggat |
42162836 |
T |
|
| Q |
232 |
ttcgttatcaaacatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagtggcttatggatttaattgtaatgggatgttta |
331 |
Q |
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| T |
42162835 |
ttcgttatcaaacatcgtcttgacaaagggtttgccggtcttattgctgtgtctagcaagggtgaagtggcttatggatttaattgtaatgggatgttta |
42162736 |
T |
|
| Q |
332 |
gaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatgatagtaataatagtacttataaatactgcctttgctactc |
420 |
Q |
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| T |
42162735 |
gaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatgatagtaataatagtacttataaatactgcctttgcaactc |
42162647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 49 - 371
Target Start/End: Complemental strand, 5479645 - 5479323
Alignment:
| Q |
49 |
ctaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatgtgaagtgtgtggagtttcttgcactggtgaagggg |
148 |
Q |
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| T |
5479645 |
ctaatgaacaagatgattggtcggattggtgactcacctttgataggagctgggacctacgcgtgtaacctagctggcgtatcatgcaccggtgaaggcg |
5479546 |
T |
|
| Q |
149 |
aggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggccttcaagaggccgtggatttcgttatcaaacatcg |
248 |
Q |
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|||| ||||||||||||||| | |||||||||||| | || || ||||| ||||||||| |||| |||||||| || ||||||||||| || || |||| |
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| T |
5479545 |
aggctatcatacgtggcactttggcgcgtgaggtgtcggctgtgatggaatacaaaggtcttggtcttcaagaagcagtggatttcgtcattaagaatcg |
5479446 |
T |
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| Q |
249 |
tcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagtggcttatggatttaattgtaatgggatgtttagaggtgttgctactgag |
348 |
Q |
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| | || ||||| | |||||| || |||||||| ||||| || || ||||| |||||||||||||| || ||||| |||||||| ||| |||| ||||| |
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| T |
5479445 |
tttggatgaaggatatgctggactcattgctgtttctagtaaaggagaagttgcttatggatttaactgcaatggcatgtttaggggttgtgcttctgag |
5479346 |
T |
|
| Q |
349 |
gatgggctcaaggaggtgggaat |
371 |
Q |
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||||| ||| |||||| ||||| |
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| T |
5479345 |
gatggattcatggaggttggaat |
5479323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 43 - 381
Target Start/End: Original strand, 47171221 - 47171559
Alignment:
| Q |
43 |
ggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaacgtacgcatgtgaagtgtgtggagtttcttgcactggtg |
142 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
47171221 |
ggagggctaatgaacaaaatgagtggtcgaattggtgattcacctctcattggtgctggaacttatgcatgtgaagtgtgtggagtttcatgcactggtg |
47171320 |
T |
|
| Q |
143 |
aaggggaggcaatcatacgtggcactcttgcgcgtgaggtggcagcagttatggagtacaaaggttttggccttcaagaggccgtggatttcgttatcaa |
242 |
Q |
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|||| || || ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| | || |||||| | || |||||||| || || || |
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| T |
47171321 |
aaggtgaagctatcattcgtggcactctcgcacgtgaagtggctgcagttatggagtacaaaggctatgaacttcaacaagctgtggattttgtgattaa |
47171420 |
T |
|
| Q |
243 |
acatcgtcttgacgaagggtttgctggtcttattgctgtgtctagcaagggtgaagtggcttatggatttaattgtaatgggatgtttagaggtgttgct |
342 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||| |||||||| || |||| |
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| T |
47171421 |
ggatcgtcttgatgaagggtttgctggtcttattgctgtgtccaacaagggtgaagtggcttatgggttcaattgtaatggaatgtttaggggctgtgct |
47171520 |
T |
|
| Q |
343 |
actgaggatgggctcaaggaggtgggaatatggaaatga |
381 |
Q |
| |
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|||||| ||||| ||| |||||||||||| ||| ||||| |
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| T |
47171521 |
actgagaatgggttcatggaggtgggaatttgggaatga |
47171559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 45731916 - 45731844
Alignment:
| Q |
32 |
caacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
104 |
Q |
| |
|
||||||| || || ||| || ||||||||||| |||||||||||||||| | || |||||||||||||||| |
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| T |
45731916 |
caacatcaactggtggattagtgaacaaaatggttggtcgaattggtgacacgccactcataggtgctggaac |
45731844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 45737246 - 45737174
Alignment:
| Q |
32 |
caacatcgaccggaggactaatgaacaaaatgagtggtcgaattggtgactcacctatcataggtgctggaac |
104 |
Q |
| |
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||||||| ||||| ||| || ||||||||||| |||||||||||| ||| | || |||||||||||||||| |
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| T |
45737246 |
caacatcaaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaac |
45737174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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