View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0794_low_8 (Length: 432)
Name: NF0794_low_8
Description: NF0794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0794_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 16562591 - 16562381
Alignment:
| Q |
13 |
aatatactttattgtggggctttattattagcttaaaataatactccagtaacaaaattccgaggccaat------gagctgttgttattttcaatcttg |
106 |
Q |
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| T |
16562591 |
aatatactttattgtggggctttattattagcttaaaataatactccagtaacaaaattccgaggccaatattaatgagctgttgttattttcaaccttg |
16562492 |
T |
|
| Q |
107 |
gcattttcctctccaggagagaaggaattgtatgccttaatttgtcagagcctagtggctatgcgtcatac-ttggtgaaaccaaatgcatattatgaaa |
205 |
Q |
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| T |
16562491 |
gcattttcctctccaggagagaaggaattgtatgccttaatttgtcagagcctagtggctatgcgtcatacattggtgaaaccaattgcatattatgaaa |
16562392 |
T |
|
| Q |
206 |
actgagtttcc |
216 |
Q |
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||||||||||| |
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| T |
16562391 |
actgagtttcc |
16562381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 277 - 406
Target Start/End: Complemental strand, 16561797 - 16561668
Alignment:
| Q |
277 |
ggttaatacaattgtgtccttttttagctcaattcattaatggtatatgactagggtttagtgtactgcgtagtgtagtaagttttttaaattccagaat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16561797 |
ggttaatacaattgtgtccttttttagctcaattcattaatggtataggactagggtttagtgtactgcgtagtgtagtaagttttttaaattccagaat |
16561698 |
T |
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| Q |
377 |
acaaagttcaatttttactcatcaaataat |
406 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16561697 |
acaaagttcaatttttactcatcaaataat |
16561668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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