View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_high_1 (Length: 734)

Name: NF0795_high_1
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_high_1
NF0795_high_1
[»] chr6 (13 HSPs)
chr6 (422-720)||(20597925-20598223)
chr6 (31-305)||(20622913-20623182)
chr6 (31-261)||(20595888-20596117)
chr6 (504-672)||(20629940-20630109)
chr6 (534-672)||(12053907-12054046)
chr6 (488-674)||(20659877-20660064)
chr6 (531-661)||(20606784-20606914)
chr6 (254-417)||(12056166-12056320)
chr6 (102-189)||(12056341-12056428)
chr6 (353-417)||(12056121-12056185)
chr6 (353-417)||(20626740-20626804)
chr6 (30-89)||(12056476-12056532)
chr6 (327-417)||(20626672-20626759)
[»] chr5 (1 HSPs)
chr5 (679-720)||(16927500-16927541)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 422 - 720
Target Start/End: Original strand, 20597925 - 20598223
Alignment:
Q  422 ttgagaatatattttggatctttgtattctaaaagcaagcctgatataaaagttggagnnnnnnngtcaacttttaagcggttttagtcggatcgatgtt 521  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  20597925 ttgagaatatattttggatctttgtattctaaaagcaagtctgatataaaagttggagaaaaaaagtcaacttttaagcggttttagtcggatcgatgtt 20598024  T
Q  522 gaaggaaaacacaattctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcgacgcgagaaaactaaagtttgacactccttattgt 621  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20598025 gaaggaaaacacaactctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcgacgcgagaaaactaaagtttgacactccttattgt 20598124  T
Q  622 gtatccaaacatgcactatggagtcaagaaagagtccaataattcttattttttaaacaggttatggtcgaagggatcgagacggaaatagcagcaaca 720  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  20598125 gtatccaaacatgcattatggagtcaagaaagagtccaatcattcttaatttttaaacgggttatggacgaagggaccgagacggaaatagcagcaaca 20598223  T

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Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 20622913 - 20623182
Alignment:
Q  31 ttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaannnnnnnaagttgaattgggattattatcgttgtagcttgc 130  Q
    |||| |||||||||||||||||||||| ||||||||||   ||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  20622913 tttttccaagtgaattgtgattattattgttggaaact---tatatggctgagaccaaatttttttaagttgaattgggattattatcgttgtagcttgc 20623009  T
Q  131 acctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacctattaactgttctgattcaaagctcctgtgaaataacaaag 230  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  20623010 acctaaggcgcttagacaaactactgaagacactccaaccgaaatataactgaagcaccaattaactgttctgattcaaagctcctgtgaaataataaag 20623109  T
Q  231 tgtttgtaaatgatatcaaaagctgcatcatcaagcttaatgttgggagaaagatatagtagaacaatctcttat 305  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  20623110 tgtctgtaaatgatatcaaaagctgaatcatcaagcttaatgttgggagaaag--atagtagaacaatctcttat 20623182  T

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Target: chr6; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 20595888 - 20596117
Alignment:
Q  31 ttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaannnnnnnaagttgaattgggattattatcgttgtagcttgc 130  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  20595888 ttttcccaagtgaattgtgattattatcgttggaaact---tatatggctgagaccaaatttttttaagttgaattgggattattatcgttgtagcttgc 20595984  T
Q  131 acctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacctattaactgttctgattcaaagctcctgtga---aataaca 227  Q
    |||||||  ||||||| ||||||| |||||||||| ||| ||||||||||||||||| ||| |||||||||||||| |||||||| ||||   |||||||    
T  20595985 acctaaggtgcttagaaaaactactgaagacactccaactgaaatataactgaagca-ctactaactgttctgatttaaagctcccgtgaaataataaca 20596083  T
Q  228 aagtgtttgtaaatgatatcaaaagctgcatcat 261  Q
    |||||| |||||||||||||||||||||||||||    
T  20596084 aagtgtctgtaaatgatatcaaaagctgcatcat 20596117  T

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Target: chr6; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 504 - 672
Target Start/End: Original strand, 20629940 - 20630109
Alignment:
Q  504 tttagtcggatcgatgttgaaggaaaacacaattctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcgacgcgagaaaactaaag 603  Q
    |||||||  ||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||| |||||||||| |||    
T  20629940 tttagtcaaatcgaggttgaaggcaaacgcaattctgatttcaaaataaccaaacatcgagatgtataccaaagtaacatttgacacgagaaaactcaag 20630039  T
Q  604 tttgacactccttattgtgtatccaaacatgcactatggagtcaagaaagagtccaat-aattcttattt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20630040 tttgacactccttattgtgtatccaaacatgcactatggagtcaagaaagaggccaataaattcttattt 20630109  T

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Target: chr6; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 534 - 672
Target Start/End: Complemental strand, 12054046 - 12053907
Alignment:
Q  534 aattctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcgacgcgagaaaactaaagtttgacactccttattgtgtatccaaacat 633  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  12054046 aattctgatttcaaaataaccaaacatcgagatgtataccaaagtcacattcgacacgagaaaactcaagtttgacactccttattgtgtatccaaacat 12053947  T
Q  634 gcactatggagtcaagaaagagtccaat-aattcttattt 672  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  12053946 gcactatggagtcaagaaagaggccaataaattcttattt 12053907  T

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Target: chr6; HSP #6
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 488 - 674
Target Start/End: Original strand, 20659877 - 20660064
Alignment:
Q  488 tcaacttttaagcggttttagtcggatcgatgttgaaggaaaacacaattctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcga 587  Q
    ||||||||||| | |||||||||  ||| | |||||||| |||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  20659877 tcaacttttaatctgttttagtcaaatcaaagttgaaggcaaacacaattctaatttcaaaataaccaaacgtcgagatatttaccaaaatcacattcga 20659976  T
Q  588 cgcgagaaaactaaagtttgacactccttattgtgtatccaaacatgcactatggagtcaagaaagagtccaat-aattcttattttt 674  Q
    | |||||||||| ||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||||    
T  20659977 cacgagaaaactcaagtttgacactcgttattgtgtatccaaacatgcaatatggtgttaagaaagagtctaatcaattcttattttt 20660064  T

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Target: chr6; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 531 - 661
Target Start/End: Original strand, 20606784 - 20606914
Alignment:
Q  531 cacaattctgatttcaaaataaccaaacattgagatgtttaccaaaatcacattcgacgcgagaaaactaaagtttgacactccttattgtgtatccaaa 630  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  20606784 cacaattctgatttcaaaataaccaaacatcgagatgtttaccaaaatcacattcgacacgagaaaactcaagtttgacactcgttgttgtgtatccaaa 20606883  T
Q  631 catgcactatggagtcaagaaagagtccaat 661  Q
    ||  || ||  |||| |||||||||||||||    
T  20606884 caaacaatacagagttaagaaagagtccaat 20606914  T

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Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 254 - 417
Target Start/End: Complemental strand, 12056320 - 12056166
Alignment:
Q  254 tgcatcatcaagcttaatgttgggagaaagatatagtagaacaatctcttatatatgtttcaataaagcaaagtcatggtgatgaattttgagggtgacc 353  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||    |||||||||||||| | |||||||||||||||||||||| ||||    
T  12056320 tgcatcatcaagcttaatgttgggagaaagata--gtagaacaatctcttat----gtttcaataaagcagaatcatggtgatgaattttgagggagacc 12056227  T
Q  354 atttttagaatgtgttctattgccctctgagcgtgaaaccttgacatttttagattgtgttcta 417  Q
    |||||||||  ||||||||||||||  |||  |||||| | | ||||||||||| |||||||||    
T  12056226 atttttaga--gtgttctattgcccaatgaatgtgaaa-cataacatttttagaatgtgttcta 12056166  T

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Target: chr6; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 12056428 - 12056341
Alignment:
Q  102 gaattgggattattatcgttgtagcttgcacctaagacgcttagacaaactaccgaagacactctaaccgaaatataactgaagcacc 189  Q
    |||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  12056428 gaattgtgattattatcgttgtagcttgcacctaaggcacttagacaaactactgaagacactccaaccgaaatataactgaagcacc 12056341  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 12056185 - 12056121
Alignment:
Q  353 catttttagaatgtgttctattgccctctgagcgtgaaaccttgacatttttagattgtgttcta 417  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  12056185 catttttagaatgtgttctattgccttttgagcgtgaaaccttcacatttttagattgtgttcta 12056121  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 20626740 - 20626804
Alignment:
Q  353 catttttagaatgtgttctattgccctctgagcgtgaaaccttgacatttttagattgtgttcta 417  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  20626740 catttttagaatgtgttctattgccttttgagcgtgaaaccttcacatttttagattgtgttcta 20626804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 12056532 - 12056476
Alignment:
Q  30 tttttcccaagtgaattgtgattattatcgttggaaactacttatatggctgagaccaaa 89  Q
    |||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||    
T  12056532 tttttcccaaatgaattgtgattattatcgttggaa---acttatatggctgagaccaaa 12056476  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 417
Target Start/End: Original strand, 20626672 - 20626759
Alignment:
Q  327 tcatggtgatgaattttgagggtgaccatttttagaatgtgttctattgccctctgagcgtgaaaccttgacatttttagattgtgttcta 417  Q
    |||||||||||||||||||||| |||||||||||||  |||| ||| |||||| |||  |||||| | | ||||||||||| |||||||||    
T  20626672 tcatggtgatgaattttgagggagaccatttttaga--gtgtcctactgccctatgaatgtgaaa-cataacatttttagaatgtgttcta 20626759  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Original strand, 16927500 - 16927541
Alignment:
Q  679 caggttatggtcgaagggatcgagacggaaatagcagcaaca 720  Q
    |||||||||| ||||||||  |||||||||||||||||||||    
T  16927500 caggttatggacgaagggaatgagacggaaatagcagcaaca 16927541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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