View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_high_12 (Length: 399)

Name: NF0795_high_12
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_high_12
NF0795_high_12
[»] chr6 (2 HSPs)
chr6 (30-386)||(5268809-5269165)
chr6 (66-143)||(15646585-15646662)
[»] chr5 (2 HSPs)
chr5 (37-276)||(27586780-27587025)
chr5 (64-147)||(16564450-16564533)
[»] scaffold2020 (1 HSPs)
scaffold2020 (64-145)||(707-788)
[»] scaffold0009 (2 HSPs)
scaffold0009 (64-145)||(164707-164788)
scaffold0009 (64-132)||(149502-149570)
[»] chr2 (3 HSPs)
chr2 (39-143)||(18983586-18983692)
chr2 (67-147)||(23174353-23174433)
chr2 (67-147)||(23585610-23585690)
[»] chr3 (2 HSPs)
chr3 (39-148)||(3253199-3253309)
chr3 (51-147)||(10708785-10708880)
[»] scaffold0050 (2 HSPs)
scaffold0050 (199-276)||(28437-28514)
scaffold0050 (42-88)||(28636-28681)
[»] chr7 (1 HSPs)
chr7 (51-114)||(26255034-26255096)
[»] scaffold0555 (1 HSPs)
scaffold0555 (65-147)||(3880-3962)
[»] chr4 (1 HSPs)
chr4 (80-141)||(20355850-20355911)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 386
Target Start/End: Complemental strand, 5269165 - 5268809
Alignment:
Q  30 ctttagtcatttttacaagcaaattaatttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcc 129  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||    
T  5269165 ctttaggcatctttacaagcaaattaatttagcacaaagataattaaaaacaagaggttcctatagaatattatagacgtttaggaggctaacaccttcc 5269066  T
Q  130 cttaatgtaaccaacccc-gaacattttaatctcaatatagggaattcaaacttttccccttcccctaggaaaataaaagatccgtggtgaatccaaact 228  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5269065 cttaacgtaaccaacccctgaaccttt-aatctcaatatagggaattcaaacttttccccttcccctaggaaaataaaagatccctggtgaatccaaact 5268967  T
Q  229 tgagattcaatgctaatctaataacttgacatctaaaaatcaccgcgataagattaaaccttagcttaattagttgatgaataaaaaacaagcatgacag 328  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5268966 tgagattcaatgctaatctaatagcttgacatctaaaaatcaccgcgataaaattaaaccttagcttaattagttgatgaataaaaaacaagcatgacag 5268867  T
Q  329 tgaaatgagaggaaaagtgaagcagtgttgcttaatttgcagtgtgtttgttgtagaa 386  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5268866 tgaaatgagaggaaaagagaagcagtgttgcttaatttgcagtgtgtttgttgtagaa 5268809  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 15646662 - 15646585
Alignment:
Q  66 aagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaa 143  Q
    ||||||| ||||||||| ||||| |||||| ||| || | ||||||||| || ||| |||||||||||| ||||||||    
T  15646662 aagataaataaaaacaataggttcctataggatactacagacgtttagggtgctaataccttcccttaacgtaaccaa 15646585  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 27586780 - 27587025
Alignment:
Q  37 catttttacaagcaaa---ttaatttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttccctta 133  Q
    ||||||||||||||||   | ||| ||| |||||||||||||||| ||||||||| ||||||| || |||| || |||||| || ||||||||||||||     
T  27586780 catttttacaagcaaacaatcaatctagcacaaagataattaaaagcaagaggttcctatagagtactatagacatttagggtgctaacaccttcccttt 27586879  T
Q  134 atgtaaccaaccccgaacattttaatctcaatataggg-aattcaaacttttccccttcccctagg-aaaataaaagatccgtggtgaatc-caaacttg 230  Q
      ||||||||||  |||  |||||||||||||||||||  |||| |  | ||||||||  ||| || |||||||||| ||  |||||| ||  ||||||     
T  27586880 gcgtaaccaaccttgaaacttttaatctcaatatagggttattcgatatattccccttttccttggaaaaataaaagctcgatggtgagtctaaaactta 27586979  T
Q  231 agattcaatgctaatctaataacttgacatctaaaaatcaccgcga 276  Q
    |||||||||||||||||||||  ||| |||| ||||||||||||||    
T  27586980 agattcaatgctaatctaatagtttggcatccaaaaatcaccgcga 27587025  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 16564450 - 16564533
Alignment:
Q  64 caaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacccc 147  Q
    |||| |||| ||||| ||| ||||| ||||||||||| ||| |||||||||||| |||  ||||||||| | ||||| ||||||    
T  16564450 caaaaataaataaaagcaataggttcctatagaatatcatagacgtttaggatgctaatcccttccctttacgtaactaacccc 16564533  T

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Target: scaffold2020 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 788 - 707
Alignment:
Q  64 caaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacc 145  Q
    |||| |||| ||||||||||||||| |||||||||| |||| ||||||||| || |||||||||||||| | ||||||||||    
T  788 caaaaataaataaaaacaagaggttcctatagaataatatagacgtttagggtgctaacaccttcccttcacgtaaccaacc 707  T

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Target: scaffold0009 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 164707 - 164788
Alignment:
Q  64 caaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacc 145  Q
    |||| |||| ||||||||||||||| |||||||||| |||| ||||||||| || |||||||||||||| | ||||||||||    
T  164707 caaaaataaataaaaacaagaggttcctatagaataatatagacgtttagggtgctaacaccttcccttcacgtaaccaacc 164788  T

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Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 149502 - 149570
Alignment:
Q  64 caaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttccctt 132  Q
    |||| |||| ||||| ||||||||| ||||||||||||||| ||||||||| || ||||||||||||||    
T  149502 caaaaataaataaaagcaagaggttcctatagaatattatagacgtttagggtgttaacaccttccctt 149570  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 18983692 - 18983586
Alignment:
Q  39 tttttacaagcaa---attaatttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaat 135  Q
    |||||||||||||   |||||||||| |||| ||||| ||||||||||||||| |||||| ||| |||| ||| ||||| || ||| ||||| |||||||    
T  18983692 tttttacaagcaagtaattaatttagcacaa-gataaataaaaacaagaggttcctataggatactatagacgcttagggtgctaatacctttccttaat 18983594  T
Q  136 gtaaccaa 143  Q
    ||||||||    
T  18983593 gtaaccaa 18983586  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 23174353 - 23174433
Alignment:
Q  67 agataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacccc 147  Q
    |||||| ||||||||||||||| ||||| | || |||| || ||||||||  ||| |||||||||||| ||||||||||||    
T  23174353 agataaataaaaacaagaggttcctataaagtactatagacatttaggatcctaataccttcccttaacgtaaccaacccc 23174433  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 23585610 - 23585690
Alignment:
Q  67 agataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacccc 147  Q
    |||||| ||||||||||||||| ||||| | || |||| || ||||||||  ||| |||||||||||| ||||||||||||    
T  23585610 agataaataaaaacaagaggttcctataaagtactatagacatttaggatcctaataccttcccttaacgtaaccaacccc 23585690  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 3253199 - 3253309
Alignment:
Q  39 tttttacaagcaaatta--atttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatg 136  Q
    ||||||||||||||| |  |||||| |||| | ||| ||||||||||||||| |||||| ||| |||| || ||||||  | ||| |||||||||||||     
T  3253199 tttttacaagcaaataacaatttagcacaagg-taaataaaaacaagaggttcctataggatactatagacatttagggggctaataccttcccttaata 3253297  T
Q  137 taaccaaccccg 148  Q
    ||||||||||||    
T  3253298 taaccaaccccg 3253309  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 10708880 - 10708785
Alignment:
Q  51 aattaatttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacccc 147  Q
    |||||||||||  |||| |||| ||||||||||||||| ||||||| || |||| ||||||| | || ||| |||||| ||||| |||| |||||||    
T  10708880 aattaatttagcccaaa-ataaataaaaacaagaggttcctatagagtactatagacgtttaaggtgttaataccttctcttaacgtaagcaacccc 10708785  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28514 - 28437
Alignment:
Q  199 aaaataaaagatccgtggtgaatccaaacttgagattcaatgctaatctaataacttgacatctaaaaatcaccgcga 276  Q
    |||||| |||||| | ||| | ||||||||||||||||||  ||||||||||| |||||  || ||||||||||||||    
T  28514 aaaatacaagatcggcggttagtccaaacttgagattcaagactaatctaatagcttgatgtccaaaaatcaccgcga 28437  T

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Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 28681 - 28636
Alignment:
Q  42 ttacaagcaaattaatttagaacaaagataattaaaaacaagaggtt 88  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||    
T  28681 ttacaagcaaaataatttagcacaa-gataattaaaaacaagaggtt 28636  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 26255096 - 26255034
Alignment:
Q  51 aattaatttagaacaaagataattaaaaacaagaggtttctatagaatattataaacgtttagg 114  Q
    ||||||||||| |||| ||||| ||||||||||||||| |||||| ||| |||| |||||||||    
T  26255096 aattaatttagcacaa-gataaataaaaacaagaggttcctataggatactatagacgtttagg 26255034  T

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Target: scaffold0555 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 3962 - 3880
Alignment:
Q  65 aaagataattaaaaacaagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaaccaacccc 147  Q
    |||||||| |||||  |||||||| ||||||| || ||||   ||||||| || |||||||||||||| ||||||| ||||||    
T  3962 aaagataaataaaagaaagaggttcctatagagtactataggtgtttagggtgttaacaccttcccttcatgtaactaacccc 3880  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 20355911 - 20355850
Alignment:
Q  80 caagaggtttctatagaatattataaacgtttaggatgataacaccttcccttaatgtaacc 141  Q
    |||||||||||||||||||| |||| ||||||| | || ||| |||||||||| | ||||||    
T  20355911 caagaggtttctatagaatactatagacgtttatggtgttaaaaccttccctttaggtaacc 20355850  T

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