View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_high_13 (Length: 398)
Name: NF0795_high_13
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 39725619 - 39725793
Alignment:
| Q |
6 |
agcagcacagatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaac |
105 |
Q |
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| T |
39725619 |
agcagcacaaatgtttgtgttgagaacagccattgatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaac |
39725718 |
T |
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| Q |
106 |
cctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatcttggccccacc |
180 |
Q |
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| T |
39725719 |
cctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatctaggccccacc |
39725793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 39725853 - 39725910
Alignment:
| Q |
236 |
tgtcaaaatataattacattatattgcaaacactaccaaacaatacatttctttcata |
293 |
Q |
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| T |
39725853 |
tgtcaaaatataattacattatattgcaaacactaccaaacaatacatttctttcata |
39725910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 5624512 - 5624681
Alignment:
| Q |
7 |
gcagcacagatgtttgtgttgagaacagccatggatgaatcaatgttggcagagtagggatctccaccgttgaaacctgcccatcccatccatagtaacc |
106 |
Q |
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| T |
5624512 |
gcagcacatatgttagtgttgagtacagcaatagaagagtcaatgtttgctgcatatggtgctccaccattgaaccctgaccaacccatccataacaatc |
5624611 |
T |
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| Q |
107 |
ctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgtccttcttcgatcttggccc |
176 |
Q |
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| T |
5624612 |
ctgctcctgctagcataagcaatacattgtttggtgggaatctctccctatcactcttcaaccttggccc |
5624681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 13348675 - 13348775
Alignment:
| Q |
58 |
gagtagggatctccaccgttgaaacctgcccatcccatccatagtaaccctgcccctgccaacgttagtaacacattgtttggtgggaatctctccctgt |
157 |
Q |
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||||| |||||||| || ||||| |||| |||||||||||||| || ||||| ||||| ||| | || | | ||||||||||||||| || ||||||| |
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| T |
13348675 |
gagtaaggatctcctccattgaatcctgtccatcccatccataatagtcctgctcctgctaacataagaaggagattgtttggtgggaacctttccctgt |
13348774 |
T |
|
| Q |
158 |
c |
158 |
Q |
| |
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| |
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|
| T |
13348775 |
c |
13348775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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