View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_high_26 (Length: 364)

Name: NF0795_high_26
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_high_26
NF0795_high_26
[»] chr3 (3 HSPs)
chr3 (54-188)||(34729341-34729475)
chr3 (259-347)||(34729181-34729270)
chr3 (259-337)||(3537354-3537435)
[»] chr8 (3 HSPs)
chr8 (259-321)||(37388427-37388490)
chr8 (279-323)||(29584343-29584387)
chr8 (279-341)||(43239895-43239959)
[»] chr4 (2 HSPs)
chr4 (282-319)||(30307540-30307577)
chr4 (259-299)||(42759544-42759585)
[»] chr1 (7 HSPs)
chr1 (279-323)||(36887038-36887082)
chr1 (282-323)||(6570643-6570684)
chr1 (56-125)||(46001500-46001568)
chr1 (259-307)||(50476676-50476725)
chr1 (279-323)||(38795280-38795324)
chr1 (279-311)||(43530178-43530210)
chr1 (279-311)||(50587202-50587234)
[»] chr7 (1 HSPs)
chr7 (259-312)||(38505223-38505277)
[»] chr5 (1 HSPs)
chr5 (279-309)||(12656243-12656273)
[»] scaffold1763 (1 HSPs)
scaffold1763 (259-311)||(484-537)
[»] scaffold0263 (1 HSPs)
scaffold0263 (274-323)||(5853-5902)
[»] chr2 (3 HSPs)
chr2 (54-127)||(4003359-4003432)
chr2 (282-323)||(7367750-7367791)
chr2 (259-319)||(36030941-36031002)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 34729475 - 34729341
Alignment:
Q  54 gcaagtggaagaagtagaggaaaattgaagaggagtgtttttggtgtttaatttttcttcacaatataaaactcaccttatctacgagaattcaaaatct 153  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||    
T  34729475 gcaagtggaagaagtacaggaaaattgaagaggagtgtttttggtggttaatttttcttcacagtataaaactctcctcatctgcgagaattcaaaaact 34729376  T
Q  154 atactggagcaggttttgagggtttaaatgaattc 188  Q
     || |||||||||||||||||||||| ||||||||    
T  34729375 gtattggagcaggttttgagggtttatatgaattc 34729341  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 34729270 - 34729181
Alignment:
Q  259 cattctcttaaaatttactctttaaaaaatgtgaaagatttctccattttcccttgtattttccaa-cccaaagccttccattcttctct 347  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34729270 cattctcttaaaatttactctttaaaaaatgtgaaaaatttctccattttcccttgtattttccaaccccaaagccttccattcttctct 34729181  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 3537354 - 3537435
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagatttctccattttcccttgtattttccaacc--caaagccttcc 337  Q
    |||||||| ||||  |||||||| ||||||| |||||||||||| ||||||||||  ||||||||| ||  |||||||||||    
T  3537354 cattctctaaaaaactactcttttaaaaaatttgaaagatttcttcattttccctcatattttccacccctcaaagccttcc 3537435  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 37388427 - 37388490
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagatttctccattttcccttgtattttc 321  Q
    |||||||| |||||||||||||| ||||||||||||||||||  ||||||||| || |||||||    
T  37388427 cattctctaaaaatttactctttcaaaaaatgtgaaagattttaccattttcctttatattttc 37388490  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 29584343 - 29584387
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||    
T  29584343 tttaaaaaatttgaaagatttcttcattttccctcgtattttcca 29584387  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 43239895 - 43239959
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttcccttgtattttccaacc--caaagccttccattc 341  Q
    |||||||||  |||||||||||||||||||||||  |||||| |||||  |||| ||||||||||    
T  43239895 tttaaaaaaattgaaagatttctccattttccctcatatttttcaaccttcaaaaccttccattc 43239959  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 30307540 - 30307577
Alignment:
Q  282 aaaaaatgtgaaagatttctccattttcccttgtattt 319  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  30307540 aaaaaatgtgaaagatttctcaattttcccttgtattt 30307577  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 42759585 - 42759544
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagattt 299  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  42759585 cattctctaaaaatttactctttcaaaaaatgtgaaagattt 42759544  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 36887038 - 36887082
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||    
T  36887038 tttaaaaaatttgaaagatttcttcattttccctcgtattttcca 36887082  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 6570643 - 6570684
Alignment:
Q  282 aaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    ||||||||||||| ||||||| |||||||||| |||||||||    
T  6570643 aaaaaatgtgaaaaatttctctattttcccttttattttcca 6570684  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 46001500 - 46001568
Alignment:
Q  56 aagtggaagaagtagaggaaaattgaagaggagtgtttttggtgtttaatttttcttcacaatataaaac 125  Q
    ||||||||||| ||||||||||| | ||||||| | |||||| | |||| ||||||||| ||||||||||    
T  46001500 aagtggaagaaatagaggaaaatgggagaggag-ggttttggaggttaacttttcttcataatataaaac 46001568  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 50476676 - 50476725
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagatttctccattt 307  Q
    |||| |||||||| || |||||| ||||||||||||||||||||||||||    
T  50476676 cattatcttaaaaattgctctttcaaaaaatgtgaaagatttctccattt 50476725  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 38795324 - 38795280
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    |||||||||| |||||||||||| ||||||||||  |||||||||    
T  38795324 tttaaaaaatttgaaagatttcttcattttccctcatattttcca 38795280  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 43530210 - 43530178
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttccc 311  Q
    |||||||||||||||||||||||| ||||||||    
T  43530210 tttaaaaaatgtgaaagatttctcaattttccc 43530178  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 50587202 - 50587234
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttccc 311  Q
    ||||||||||||| |||||||||||||||||||    
T  50587202 tttaaaaaatgtgtaagatttctccattttccc 50587234  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 38505277 - 38505223
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagatttctccattttccct 312  Q
    |||||||| ||||  |||||||| ||||||| |||||||||||||||||||||||    
T  38505277 cattctctaaaaaactactcttttaaaaaatttgaaagatttctccattttccct 38505223  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 12656273 - 12656243
Alignment:
Q  279 tttaaaaaatgtgaaagatttctccattttc 309  Q
    |||||||||||||||||||||||||||||||    
T  12656273 tttaaaaaatgtgaaagatttctccattttc 12656243  T

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Target: scaffold1763 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 537 - 484
Alignment:
Q  259 cattctcttaaaatttactcttt-aaaaaatgtgaaagatttctccattttccc 311  Q
    |||||||| |||||||||||||| ||||||||||||| ||||  ||||||||||    
T  537 cattctctaaaaatttactctttcaaaaaatgtgaaatattttaccattttccc 484  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 5902 - 5853
Alignment:
Q  274 tactctttaaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    ||||||||||||| | | |||||||||||||||||||||  |||||||||    
T  5902 tactctttaaaaattttaaaagatttctccattttccctcatattttcca 5853  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 4003359 - 4003432
Alignment:
Q  54 gcaagtggaagaagtagaggaaaattgaagaggagtgtttttggtgtttaatttttcttcacaatataaaactc 127  Q
    ||||||||||||| ||||||||||| | || |||| | ||| || | |||||||||||||| |||| |||||||    
T  4003359 gcaagtggaagaaatagaggaaaatgggaggggagggctttggggggttaatttttcttcataatacaaaactc 4003432  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 7367750 - 7367791
Alignment:
Q  282 aaaaaatgtgaaagatttctccattttcccttgtattttcca 323  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  7367750 aaaaaatgtgaaagatttcttcattttccctcatattttcca 7367791  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 36030941 - 36031002
Alignment:
Q  259 cattctcttaaaatttactcttta-aaaaatgtgaaagatttctccattttcccttgtattt 319  Q
    |||||||| ||||  ||||||||  |||||||||||||||||||||||||| || |||||||    
T  36030941 cattctctaaaaaaatactctttccaaaaatgtgaaagatttctccatttttccctgtattt 36031002  T

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