View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_high_4 (Length: 548)

Name: NF0795_high_4
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_high_4
NF0795_high_4
[»] chr6 (1 HSPs)
chr6 (38-526)||(1885589-1886077)
[»] scaffold0867 (1 HSPs)
scaffold0867 (345-526)||(2102-2283)
[»] chr1 (1 HSPs)
chr1 (345-526)||(16681242-16681423)
[»] chr8 (1 HSPs)
chr8 (345-526)||(5189891-5190073)
[»] chr4 (3 HSPs)
chr4 (345-526)||(23561375-23561556)
chr4 (349-526)||(48264357-48264534)
chr4 (257-315)||(19485507-19485565)
[»] chr7 (2 HSPs)
chr7 (352-519)||(9212240-9212407)
chr7 (257-345)||(29681576-29681664)
[»] chr2 (2 HSPs)
chr2 (369-526)||(29986627-29986784)
chr2 (257-345)||(13250604-13250692)
[»] chr5 (1 HSPs)
chr5 (285-349)||(10524023-10524087)
[»] chr3 (1 HSPs)
chr3 (257-345)||(4489692-4489780)


Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 38 - 526
Target Start/End: Complemental strand, 1886077 - 1885589
Alignment:
Q  38 tatacatgtagtttaaaatcttctttcttgttagagaaactgagagaatatgtgatatgtacttagtctaacacttttcattgaactttattaaacttta 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1886077 tatacatgtagtttaaaatcttctttcttgatagagaaactgagagaatatgtgatatgtacttagtctaacacttttcattgaactttattaaacttta 1885978  T
Q  138 gatttaatacatatttagtctctctatttttcctgattcatgattttagcctcttcattttaaatctgaaacataatcatccaaattttaaaatttatga 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1885977 gatttaatacatatttagtctctctatttttcctgattcatgattttagcctcttcattttaaatctgaaacataatcatccaagttttaaaatttatga 1885878  T
Q  238 aattttttctaatactaagtttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattggga 337  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1885877 aattttttctaacactaagtttatcaaagaaaacagaaaaatcaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattggga 1885778  T
Q  338 aatgtgataccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgatacc 437  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  1885777 aatgtgataccagttgcgtcaaccgtcagctgaaaatattcatcatgttgaccaagagcttcaactatgcgaaggaagacatgtttatgcattcggtacc 1885678  T
Q  438 ttctacgaaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
    ||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1885677 ttcgacgaaactactcatccatgtaaaccggagcttctgaaaaataatcgttgaataaccgcttatatccttcttcacgattcctctct 1885589  T

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Target: scaffold0867 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 2283 - 2102
Alignment:
Q  345 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 444  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||| ||||||| |||    
T  2283 taccagttgcgtcaaccttcggctgaaaatattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcgacg 2184  T
Q  445 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
     || ||||||||  || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2183 gaattgctcatctgtgaaaaccggagtttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 2102  T

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Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 16681242 - 16681423
Alignment:
Q  345 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 444  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||     
T  16681242 taccacttgcgtcaaccctcggctgaaaatattcatcatgttgactaagagcttcaactatgtgaaggaagacatgtttacgcattcgataccttcaaca 16681341  T
Q  445 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
     |||||||||||| ||||||| ||| |||||||||||||||||| |||||| |||||||| || ||||||| ||||||||||    
T  16681342 gaactgctcatccgtgtaaactggagcttctgaaaaataatcatcgaataaacgcttatgcccgtcttcacaattcctctct 16681423  T

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Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 5190073 - 5189891
Alignment:
Q  345 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 444  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||  |||    
T  5190073 taccagttgcgtcaaccctcgactgaaaatattcatcatgttgactaagagcttcaattatgcgaaggaagacatgtttacgcattcggtaccttagacg 5189974  T
Q  445 aaactgctcatccatgta-aaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
     ||||||| |||| |||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5189973 gaactgctgatccgtgtataatcggagcttatgaaaaataatcattgaataaccgcttatgtccttcttcacaattcctctct 5189891  T

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Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 345 - 526
Target Start/End: Original strand, 23561375 - 23561556
Alignment:
Q  345 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 444  Q
    |||||||||| |||||  ||||||||||||| ||||||| ||| |||||||||||||||| |||||  |||||||||||| ||||||||||||||  |||    
T  23561375 taccagttgcatcaaccctcagctgaaaatactcatcatattggctaagagcttcaactaagcgaagaaagacatgtttatgcattcgataccttagacg 23561474  T
Q  445 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
     |||||||||||| |||| || |||  |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  23561475 gaactgctcatccgtgtacactggagtttctgaaaaataatcattgaataatcgctcatgtccttcttcgcgattcctctct 23561556  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 526
Target Start/End: Original strand, 48264357 - 48264534
Alignment:
Q  349 agttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaac 448  Q
    |||||| |||||  |||||||||||||  |||||| ||| | ||||||||||||||||||||  |||||||||||| ||||||| ||||||  ||  |||    
T  48264357 agttgcatcaaccctcagctgaaaatacccatcatattggccaagagcttcaactatgcgaagaaagacatgtttatgcattcggtaccttagacagaac 48264456  T
Q  449 tgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
    ||||||||| |||| ||  ||  |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  48264457 tgctcatccgtgtacactagagtttctgaaaaataatcattgaataatcgcttgtgtccttcttcgcgattcctctct 48264534  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 19485565 - 19485507
Alignment:
Q  257 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaa 315  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||||||| ||||| ||||    
T  19485565 tttatcaaagaaaacaggaaaactaccgtagcaatgcactactacggtgccaagaaaaa 19485507  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 352 - 519
Target Start/End: Original strand, 9212240 - 9212407
Alignment:
Q  352 tgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaactgc 451  Q
    |||||||||  ||||||||||||| ||||||||||||  ||||| |||||||||| ||| ||| ||||||||||||||||| ||||||| |||||| |||    
T  9212240 tgcgtcaaccctcagctgaaaatactcatcatgttgatcaagagtttcaactatgtgaaggaaaacatgtttacgcattcggtaccttcgacgaaattgc 9212339  T
Q  452 tcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgatt 519  Q
    |||||| |||||||  || ||||| |||||||||||||||||||| | | ||||||||||||| ||||    
T  9212340 tcatccgtgtaaactagagcttctaaaaaataatcattgaataactgttcatgtccttcttcatgatt 9212407  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 29681576 - 29681664
Alignment:
Q  257 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 345  Q
    ||||||||||||| |||| |||||||  | |||||||||| ||||| | |||||| ||||  ||| || ||| |||||| |||||||||    
T  29681576 tttatcaaagaaatcagataaaccacagttgcaatgcagtgctacgttgccaagtgaaaagctgaaattatgttattggaaaatgtgat 29681664  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 526
Target Start/End: Original strand, 29986627 - 29986784
Alignment:
Q  369 gaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaactgctcatccatgtaaaccgg 468  Q
    ||||||| |||||||||| || ||||||||| || || | || |||| |||||||| ||||||||||||||| || |||||||| |||||||||  |  |    
T  29986627 gaaaataatcatcatgtttaccaagagcttcgacgatacaaaggaaggcatgtttatgcattcgataccttcgacaaaactgctaatccatgtaccctag 29986726  T
Q  469 aacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 526  Q
    |  ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  29986727 agtttctgaaaagtaattattgaacaaccgcttatgtccttcttcacgattcctctct 29986784  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 13250604 - 13250692
Alignment:
Q  257 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 345  Q
    ||||||||||||| |||| |||||||| | |||||||||| ||| ||| |||||| ||||  |||||| ||| ||||||||||||||||    
T  13250604 tttatcaaagaaatcagataaaccaccgttgcaatgcagtgctatggtgccaagtgaaaagctgacattatgctattgggaaatgtgat 13250692  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 10524023 - 10524087
Alignment:
Q  285 tagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgatacca 349  Q
    |||||||||| ||||||||| ||||| ||||   ||||||| || ||| ||||||||||||||||    
T  10524023 tagcaatgcaatactacggtgccaagaaaaagcctgacatattgctatggggaaatgtgatacca 10524087  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 4489780 - 4489692
Alignment:
Q  257 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 345  Q
    ||||||||||||| |||| |||||||| | |||||||||| ||| ||| |||| | ||||  | |||| |||  |||||||||||||||    
T  4489780 tttatcaaagaaatcagataaaccaccgttgcaatgcagtgctatggtgccaaatgaaaagctcacattatgccattgggaaatgtgat 4489692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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