View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_high_48 (Length: 255)
Name: NF0795_high_48
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 53869923 - 53870152
Alignment:
| Q |
1 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869923 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttac |
53870022 |
T |
|
| Q |
101 |
caaatacaattcc-----ttctagttttagctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatt |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53870023 |
caaatacaattccatgttttctagttttagctgtaacttctatgggtcttctaagatg--ttttttaatttttattatgtcatagactaagatgaaaatt |
53870120 |
T |
|
| Q |
196 |
tgtttaaagnnnnnnnttgcaacccaatttct |
227 |
Q |
| |
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||||||||| |||||||||||||||| |
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|
| T |
53870121 |
tgtttaaagaaaaaatttgcaacccaatttct |
53870152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5277698 - 5277927
Alignment:
| Q |
1 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5277698 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaattcctcagcaagtgttttttac |
5277797 |
T |
|
| Q |
101 |
caaatacaattcc-----ttctagttttagctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatt |
195 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5277798 |
caaatacaattccatgttttctagttttagctgtaacttttatgggtcttctaagatg--ttttttaatttttattatgtcatagactaagatgaaaatt |
5277895 |
T |
|
| Q |
196 |
tgtttaaagnnnnnnnttgcaacccaatttct |
227 |
Q |
| |
|
||||||||| |||||||||||||||| |
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| T |
5277896 |
tgtttaaagaaaaaatttgcaacccaatttct |
5277927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40727241 - 40727398
Alignment:
| Q |
1 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727241 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaacccctcattgtttctcttacatcccaactcctcagcaagtgttttttac |
40727340 |
T |
|
| Q |
101 |
caaatacaattcc-----ttctagttttagctgtaacttgtatgggtcttctaagatg |
153 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40727341 |
caaatacaatttcatattttctagttttagctgtaacttgtatgggtcttctaagatg |
40727398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 625215 - 625059
Alignment:
| Q |
1 |
ttctttgtagcatttctaatttcagttgcatacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttac |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
625215 |
ttctttgtagtatttctaatttcagttgcatacccatcatcttcta-acaaccactcattgtttctcttacatcccaactcctcagcaagtgtattttac |
625117 |
T |
|
| Q |
101 |
caaatacaattcc-----ttctagttttagctgtaacttgtatgggtcttctaagatg |
153 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
625116 |
caaatacaattccatgttttctagttttagttgtaacttgtatgggtcttctaagatg |
625059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 625045 - 625011
Alignment:
| Q |
169 |
attatgtcatagactaagatgaaaatttgtttaaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
625045 |
attatgtcatagactaagatgaaaatttgtttaaa |
625011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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