View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_high_56 (Length: 216)
Name: NF0795_high_56
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_high_56 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25534129 - 25534344
Alignment:
| Q |
1 |
ggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgactcttccattcatagtcatgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534129 |
ggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtaccttttctatgcaactatgtttctctaattgactcttccattcatagtcatgaac |
25534228 |
T |
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| Q |
101 |
attggcaattactgaagatggcacagaaaccattgaccgtgattttgtgcgttttattcctaatcaaagaaacttactctgttctgatgtttataaggat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534229 |
attggcaattattgaagatggcacagaaaccattgaccgtgattttgtgcgttttattcctaatcaaagaaacttactctgttctgatgtttataaggat |
25534328 |
T |
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| Q |
201 |
gcagtttcttcatttg |
216 |
Q |
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|||||||||||||||| |
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| T |
25534329 |
gcagtttcttcatttg |
25534344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25526127 - 25526342
Alignment:
| Q |
1 |
ggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgactcttccattcatagtcatgaac |
100 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526127 |
ggaatctcgatgcatttgaaagtaaacaaactaactgaatgtgtgcatttcatatgcagctatgtttctctaattgactcttccattcatagtcatgaac |
25526226 |
T |
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| Q |
101 |
attggcaattactgaagatggcacagaaaccattgaccgtgattttgtgcgttttattcctaatcaaagaaacttactctgttctgatgtttataaggat |
200 |
Q |
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| T |
25526227 |
attggcaattactgaagatgacacagaaaccattgaccctgattttgtgcgttttattcctaatcaaagaaacttactctgttctaatgtttataaggat |
25526326 |
T |
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| Q |
201 |
gcagtttcttcatttg |
216 |
Q |
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|||||||||| ||||| |
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| T |
25526327 |
gcagtttctttatttg |
25526342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 25516284 - 25516102
Alignment:
| Q |
1 |
ggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgactcttccattcatagtcatgaac |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
25516284 |
ggaacctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcatatgcaaacatgtttttctaattgactcttcgattcatagtcatgaag |
25516185 |
T |
|
| Q |
101 |
attggcaattactgaagatggcacagaaaccattgaccgtgattttgtgcgttttattcctaatcaaagaaacttactctgtt |
183 |
Q |
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| T |
25516184 |
tttggaaattactgatgatgacgcagaaaacattgaccatgattttgtgcgttttaatcctaatcaaataaacttactttgtt |
25516102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25540665 - 25540867
Alignment:
| Q |
1 |
ggaatctcgatgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtt-tctctaattgactcttccattcatagtcatgaa |
99 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||| ||| |||||||||||| ||||| |||||||||| |
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| T |
25540665 |
ggaaactcgatgcatttgaaagtaaaccaagta------tgtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaa |
25540758 |
T |
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| Q |
100 |
cattggcaattactgaagatggcacagaaaccattgaccgtgattttgtgcgttttattcctaatcaaagaaacttactctgttctgatgtttataagga |
199 |
Q |
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||||| ||||||||| |||| |||||||| |||||||| |||| |||||| |||||||| |||||| | |||| |||||| ||||| | ||||| |
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| T |
25540759 |
gattggaaattactgatgatgacacagaaatcattgaccatgat------cgttttcttcctaatgaaagaagcctactttgttctaatgttcagaagga |
25540852 |
T |
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| Q |
200 |
tgcagtttcttcatt |
214 |
Q |
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|||||| ||||||| |
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| T |
25540853 |
agcagttccttcatt |
25540867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 25539569 - 25539637
Alignment:
| Q |
11 |
tgcatttgaaagtaaaccaagtaactgaatgtgtacctttcctatgcaactatgtttctctaattgact |
79 |
Q |
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|||||||| ||||| ||||||| | || ||||||||| || ||| ||||||||||||||||||||||| |
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| T |
25539569 |
tgcatttggaagtagaccaagttaaggattgtgtacctgtcatatacaactatgtttctctaattgact |
25539637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 27123277 - 27123234
Alignment:
| Q |
48 |
tttcctatgcaactatgtttctctaattgactcttccattcata |
91 |
Q |
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|||| |||||||||| |||||||||||||||||||| ||||||| |
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| T |
27123277 |
tttcatatgcaactaggtttctctaattgactcttcgattcata |
27123234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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