View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_high_6 (Length: 462)
Name: NF0795_high_6
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 30010368 - 30010773
Alignment:
| Q |
14 |
atatataccactacatctaatctgtaataaatttgacnnnnnnnnnnnnnnnnnngcttctaaatttcaggtgtttggggtgttacatttgattgtgtct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010368 |
atatataccactacatctaatctgtaataaatttgactttttttggaatttttttgcttctaaatttcaggtgtttggggtgttacatttgattgtgtct |
30010467 |
T |
|
| Q |
114 |
ctggggctttttcttgctacggataagtttttgaagaaagcatttgtagcagctgccatcaaatttcctagtgcattgtttgggatgttttgtatatttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010468 |
ctggggctttttcttgctacggataagtttttgaagaaagcatttgtagcagctgctatcaaatttcctagtgcattgtttgggatgttttgtatatttt |
30010567 |
T |
|
| Q |
214 |
cagttttgattattcttgactctaccgtgccatctgcagctacagcagtgatgaacttctttgagcctgcgttcatgttcattcagagatggctcccttt |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010568 |
cagttttgattattcttgattctaccgtgccatctgcagctacatcagtgatgaacttctttgagcctgcgttcatgttcattcagagatggctcccttt |
30010667 |
T |
|
| Q |
314 |
gttctatgttccttctttggttgtcttgcctctttctgttaaagatatacctgctgcttctggcatcaaaattggtcttattgtaggttggtgcatgtat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30010668 |
gttctatgttccttctttggttgtcttgcctctttctgttaaagatatacctgctgcttctggcatcaaaattggtcttattgtaggttggtgcatgtat |
30010767 |
T |
|
| Q |
414 |
ttcttg |
419 |
Q |
| |
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|||||| |
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| T |
30010768 |
ttcttg |
30010773 |
T |
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