View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_high_8 (Length: 446)
Name: NF0795_high_8
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 46527253 - 46526848
Alignment:
| Q |
11 |
caaaggtatatgatctttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcac |
110 |
Q |
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| T |
46527253 |
caaaggtatatgatctttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcac |
46527154 |
T |
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| Q |
111 |
attgtgtgattcagtaccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggct |
210 |
Q |
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| T |
46527153 |
attgtgtgattcagtaccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggct |
46527054 |
T |
|
| Q |
211 |
tgtagtagcatttaaatttactgcatagtgcattacctcatctctttgttcctcataaattgaacaaaatatattttaatgctgagaatgtgtggtgtaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
46527053 |
tgtagtagcatttaaatttactgcatagtgcattacctcatctctttgttcctcataaattgaacaaaatatattttaatgctgagaatatgcggtgtaa |
46526954 |
T |
|
| Q |
311 |
ctattttactaaaatgtataaagttaccnnnnnnnnnntgttaagttgttttaggtagatttaaatgcannnnnnngtcccataacttttgcattacttg |
410 |
Q |
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| T |
46526953 |
ctattttactaaaatgtataaagttacc-aaaaaaaaatgttaagttgttttaggtagatttaaatgcatttttttgtcccataacttttgcattacttg |
46526855 |
T |
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| Q |
411 |
caatttt |
417 |
Q |
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| T |
46526854 |
caatttt |
46526848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 3441339 - 3441248
Alignment:
| Q |
37 |
gcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtacca |
129 |
Q |
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| T |
3441339 |
gcagcaggcgaatcctaaccctaccacattggcagtatccataattgaatttaaaacatgtatggacaattcac-ttgggtgattcagtacca |
3441248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 3450472 - 3450391
Alignment:
| Q |
73 |
atccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaatttaaggct |
158 |
Q |
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| T |
3450472 |
atccataattgaatttaaaacatgtatgtacaaatcaca-tgggtgattcagtacc---aattgttagatgcctcaacttatggct |
3450391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 3576510 - 3576426
Alignment:
| Q |
71 |
gtatccagaattgaatttaaa-gcatgtat-ggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaattta |
153 |
Q |
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| T |
3576510 |
gtatccatacttgaatttaaaagcatgtataggacaagtcacattgggtgattcaataccaacaactgttagatgcctcaattta |
3576426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 3567151 - 3567103
Alignment:
| Q |
132 |
aattgttagatgcctcaatttaaggcttttgttttgcttctacagggca |
180 |
Q |
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| T |
3567151 |
aattgttagatgcctcaatttatggcttttgttttgcttccacacggca |
3567103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 3567045 - 3566987
Alignment:
| Q |
246 |
cctcatctctttgttcctcataaattgaacaaaatatattttaatgctgagaatgtgtg |
304 |
Q |
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| T |
3567045 |
cctcatctctttgttcctcataaagttaaaaaaatctattttgatgttgagaatatgtg |
3566987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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