View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_high_9 (Length: 446)

Name: NF0795_high_9
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_high_9
NF0795_high_9
[»] chr3 (9 HSPs)
chr3 (190-438)||(31206889-31207128)
chr3 (47-95)||(42102375-42102423)
chr3 (48-95)||(36869723-36869770)
chr3 (49-95)||(27198041-27198087)
chr3 (53-95)||(35376442-35376484)
chr3 (49-95)||(35987379-35987425)
chr3 (50-95)||(20216086-20216131)
chr3 (47-100)||(40785584-40785637)
chr3 (47-95)||(42888982-42889030)
[»] chr2 (6 HSPs)
chr2 (30-95)||(36763388-36763453)
chr2 (50-95)||(37631255-37631300)
chr2 (48-95)||(1574591-1574638)
chr2 (46-96)||(3960033-3960083)
chr2 (50-92)||(13454102-13454144)
chr2 (190-224)||(39309976-39310010)
[»] chr1 (13 HSPs)
chr1 (42-95)||(40605301-40605354)
chr1 (49-99)||(17526554-17526604)
chr1 (46-100)||(21255669-21255723)
chr1 (50-100)||(16987580-16987630)
chr1 (54-99)||(32939174-32939219)
chr1 (50-95)||(35043608-35043653)
chr1 (50-98)||(47059778-47059826)
chr1 (48-95)||(23554889-23554936)
chr1 (54-96)||(51168660-51168702)
chr1 (50-95)||(43640875-43640920)
chr1 (51-95)||(36230197-36230241)
chr1 (47-95)||(40238576-40238624)
chr1 (50-94)||(50142273-50142317)
[»] chr4 (11 HSPs)
chr4 (49-100)||(44272699-44272750)
chr4 (50-100)||(44495884-44495934)
chr4 (49-100)||(18874811-18874862)
chr4 (52-99)||(35908543-35908590)
chr4 (195-233)||(13252527-13252565)
chr4 (49-95)||(23220474-23220520)
chr4 (47-92)||(48148509-48148554)
chr4 (54-98)||(2613509-2613553)
chr4 (51-95)||(33860435-33860479)
chr4 (54-98)||(41609564-41609608)
chr4 (49-93)||(42510812-42510856)
[»] chr8 (5 HSPs)
chr8 (50-95)||(37392016-37392061)
chr8 (50-95)||(38844679-38844724)
chr8 (50-94)||(36524640-36524684)
chr8 (49-100)||(38174136-38174187)
chr8 (46-83)||(9000898-9000935)
[»] chr7 (12 HSPs)
chr7 (47-100)||(40077388-40077441)
chr7 (52-100)||(10619589-10619637)
chr7 (49-91)||(4971429-4971471)
chr7 (51-93)||(28110095-28110137)
chr7 (49-99)||(31329241-31329291)
chr7 (49-95)||(37392181-37392227)
chr7 (47-100)||(4678196-4678249)
chr7 (50-95)||(33056754-33056799)
chr7 (54-95)||(43159601-43159642)
chr7 (50-83)||(46148316-46148349)
chr7 (54-94)||(3239425-3239465)
chr7 (47-95)||(44649352-44649400)
[»] chr6 (6 HSPs)
chr6 (50-99)||(18272476-18272525)
chr6 (47-100)||(20712199-20712252)
chr6 (50-100)||(12044463-12044513)
chr6 (49-95)||(23653780-23653826)
chr6 (49-90)||(6110429-6110470)
chr6 (50-99)||(9188834-9188883)
[»] chr5 (3 HSPs)
chr5 (54-99)||(19824126-19824171)
chr5 (50-95)||(3960057-3960102)
chr5 (47-95)||(41460254-41460302)
[»] scaffold0318 (1 HSPs)
scaffold0318 (50-100)||(18179-18229)
[»] scaffold0201 (1 HSPs)
scaffold0201 (54-95)||(8476-8517)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 190 - 438
Target Start/End: Original strand, 31206889 - 31207128
Alignment:
Q  190 ttgttacaaaatgattatataaatatcatttctcaatgagatataagccactaaaaataagctataaatttgtgtgagaaaaaattgctatcaaacaaat 289  Q
    |||| ||||||||||| || ||||||||||||| ||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31206889 ttgtcacaaaatgattgtacaaatatcatttctgaataagatataagctagtaaaaataagttataaatttgtgtgagaaaaaattgctatcaaacaaat 31206988  T
Q  290 ctttttctatcgtataaacttaaaagctaccagttctaaatctgtcttttgccaaactccccatgaatgcaaatccaacttctccaagtttgtccccact 389  Q
    ||||||||||||||||||||        || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31206989 ctttttctatcgtataaact--------acaagttctaaatctgtcttt-gccaaactccccatgaatgcaaatccaacttctccaagtttgtccccact 31207079  T
Q  390 tagggaaataagtcaaacaaacatcacaaaagccaattcgtcctatgat 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31207080 tagggaaataagtcaaacaaacatcacaaaagccaattcgtcctatgat 31207128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 42102423 - 42102375
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  42102423 ttagagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 42102375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 36869723 - 36869770
Alignment:
Q  48 tagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  36869723 tagagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 36869770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 27198041 - 27198087
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||||| |||||| |||||| |||||| |||||||||||    
T  27198041 agagcaatgatatttgaacaatcatttgctaacaacttttatgacaa 27198087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 35376442 - 35376484
Alignment:
Q  53 caatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||| ||| |||||||||||||||| |||||||||||    
T  35376442 caatgatatttgaagaaccatttgttaacaacttttatgacaa 35376484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 35987425 - 35987379
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||    
T  35987425 agagcaatgatatttgaacaatcatttgcttacaatttttatgacaa 35987379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 20216131 - 20216086
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||  ||||||||||| ||||||    
T  20216131 gagcaatgatatttgaacaaccatttactaacaatttttgtgacaa 20216086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 40785584 - 40785637
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    |||||||||||||||| ||||||||||||| |||| | ||| ||||||| ||||    
T  40785584 ttagagcaatgatatttgaacaaccatttgctaacgactttgatgacaacctcc 40785637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 42888982 - 42889030
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||| ||| |||||||||||||||||| || ||||||||| ||||||    
T  42888982 ttagagaaataatattcgaacaaccattttttgacaatttttgtgacaa 42889030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 36763388 - 36763453
Alignment:
Q  30 tcttgaaggaagtagaattagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36763388 tcttgaaggaagtagaattagagcaatgatatttgaacaaccatttgttaacaatttttatgacaa 36763453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 37631255 - 37631300
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||||    
T  37631255 gagcaatgatatttgaacaaccatttgctaacaacttttatgacaa 37631300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 1574638 - 1574591
Alignment:
Q  48 tagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  1574638 tagagcaatgatatttgaacaaccatttgctaacaactttaatgacaa 1574591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 3960083 - 3960033
Alignment:
Q  46 attagagcaatgatattcgaacaaccatttgttaacaatttttatgacaat 96  Q
    |||| |||||||||||| |||||||||||||  ||||| ||||||||||||    
T  3960083 attacagcaatgatatttgaacaaccatttgcgaacaacttttatgacaat 3960033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 13454144 - 13454102
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatga 92  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||    
T  13454144 gagcaatgatatttgaacaatcatttgttaacaacttttatga 13454102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 39310010 - 39309976
Alignment:
Q  190 ttgttacaaaatgattatataaatatcatttctca 224  Q
    ||||||||||||||||||| |||||||||||||||    
T  39310010 ttgttacaaaatgattatacaaatatcatttctca 39309976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 40605301 - 40605354
Alignment:
Q  42 tagaattagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  40605301 tagaattagagcaatgatatttgaacaaccatttgctaacaacttttatgacaa 40605354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 17526604 - 17526554
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||||||    
T  17526604 agagcaatgatatttgaacaatcatttgctaacaatttttatgacaatctc 17526554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 21255669 - 21255723
Alignment:
Q  46 attagagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  21255669 attagagcaatgatatttgaacaaccatttgctaacaacttttatgacaacctcc 21255723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 16987630 - 16987580
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||| ||||    
T  16987630 gagcaatgatatttgaacaaccatttgctaacaatttctatgacaacctcc 16987580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 32939174 - 32939219
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||    
T  32939174 aatgatatttgaacaaccatttgctaacaacttttatgacaatctc 32939219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 35043608 - 35043653
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||||    
T  35043608 gagcaatgatatttgaacaaccatttgctaacaattttcatgacaa 35043653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 47059778 - 47059826
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatct 98  Q
    ||||||||||||| ||||||||||||| |||||| ||| ||||||||||    
T  47059778 gagcaatgatatttgaacaaccatttgctaacaactttcatgacaatct 47059826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 23554936 - 23554889
Alignment:
Q  48 tagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  23554936 tagagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 23554889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 51168660 - 51168702
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaat 96  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||    
T  51168660 aatgatatttgaacaaccatttgctaacaacttttatgacaat 51168702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43640875 - 43640920
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  43640875 gagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 43640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 36230197 - 36230241
Alignment:
Q  51 agcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||| ||||||| ||||  ||||||||||||||||||    
T  36230197 agcaatgatatttgaacaactattttctaacaatttttatgacaa 36230241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 40238624 - 40238576
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||| ||||| |||||| ||||||||||||| ||| |||||||    
T  40238624 ttagagcaatcatatttgaacaatcatttgttaacaactttgatgacaa 40238576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 50142317 - 50142273
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgaca 94  Q
    ||||||||||||| |||||| |||||| | |||||||||||||||    
T  50142317 gagcaatgatatttgaacaatcatttgatgacaatttttatgaca 50142273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 44272699 - 44272750
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  44272699 agagcaatgatatttgaacaaccatttgctaacaattttgatgacaatctcc 44272750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 44495884 - 44495934
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||| ||||||||||||| |||||| || |||||||||||||    
T  44495884 gagcaatgatatttgaacaaccatttgctaacaacttctatgacaatctcc 44495934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 18874811 - 18874862
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    |||||||||||||| |||||| |||||| |||||| ||||||||||| ||||    
T  18874811 agagcaatgatatttgaacaatcatttgctaacaacttttatgacaacctcc 18874862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 35908590 - 35908543
Alignment:
Q  52 gcaatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    ||||||||||| ||||||  ||||||||||||||| ||||||||||||    
T  35908590 gcaatgatatttgaacaattatttgttaacaatttgtatgacaatctc 35908543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 13252565 - 13252527
Alignment:
Q  195 acaaaatgattatataaatatcatttctcaatgagatat 233  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  13252565 acaaaatgattatataaatatcatttctcagttagatat 13252527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 23220520 - 23220474
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  23220520 agagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 23220474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 48148554 - 48148509
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatga 92  Q
    ||||||||||| |||| ||||||||||||| |||||| ||||||||    
T  48148554 ttagagcaatggtatttgaacaaccatttgctaacaacttttatga 48148509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 2613509 - 2613553
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaatct 98  Q
    ||||||||| ||||||||||||| |||||| |||| |||||||||    
T  2613509 aatgatatttgaacaaccatttgataacaacttttgtgacaatct 2613553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 33860435 - 33860479
Alignment:
Q  51 agcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||| ||||||||||||| |||||| ||| |||||||    
T  33860435 agcaatgatatttgaacaaccatttgctaacaactttgatgacaa 33860479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 41609564 - 41609608
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaatct 98  Q
    ||||||||| ||||||||||||| | ||||||||| |||||||||    
T  41609564 aatgatatttgaacaaccatttgatgacaatttttgtgacaatct 41609608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 42510812 - 42510856
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgac 93  Q
    |||||||||||||| ||||||||||||| |||||| ||| |||||    
T  42510812 agagcaatgatatttgaacaaccatttgctaacaactttgatgac 42510856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 37392016 - 37392061
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  37392016 gagcaatgatatttgaacaaccatttgttaacaatttttttgacaa 37392061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 38844679 - 38844724
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  38844679 gagccatgatatttgaacaaccatttgttaacaatttttatgacaa 38844724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 36524640 - 36524684
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgaca 94  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||    
T  36524640 gagcaatgatatttgaacaaccatttgctaacaacttttatgaca 36524684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 38174136 - 38174187
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    |||||||||||||| ||||||||||||| |||||| || |||||||| ||||    
T  38174136 agagcaatgatatttgaacaaccatttgctaacaacttctatgacaacctcc 38174187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 9000898 - 9000935
Alignment:
Q  46 attagagcaatgatattcgaacaaccatttgttaacaa 83  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  9000898 attagagcaatgatatttgaacaaccatttgctaacaa 9000935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 40077441 - 40077388
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  40077441 ttagatcaatgatatttgaacaaccatttgttaacaacttttatgacaacctcc 40077388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 10619589 - 10619637
Alignment:
Q  52 gcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  10619589 gcaatgatatttgaacaaccatttgctaacaacttttatgacaacctcc 10619637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 4971471 - 4971429
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatg 91  Q
    |||||||||||||| ||||||||||||| |||||| |||||||    
T  4971471 agagcaatgatatttgaacaaccatttgctaacaacttttatg 4971429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 28110137 - 28110095
Alignment:
Q  51 agcaatgatattcgaacaaccatttgttaacaatttttatgac 93  Q
    |||||||||||| ||||||||||||| |||||| |||||||||    
T  28110137 agcaatgatatttgaacaaccatttgctaacaacttttatgac 28110095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 31329241 - 31329291
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    |||||||| ||||| ||||||||||||  |||||| |||||||||||||||    
T  31329241 agagcaataatatttgaacaaccatttactaacaacttttatgacaatctc 31329291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 37392227 - 37392181
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  37392227 agagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 37392181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4678249 - 4678196
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||||||  |||||||||||| |||||| ||| ||||||| ||||    
T  4678249 ttagagcaatgatatttaaacaaccatttgctaacaactttgatgacaacctcc 4678196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33056799 - 33056754
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||||||    
T  33056799 gagcaatgatatttgaacaaccatttgctaataattttaatgacaa 33056754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 43159642 - 43159601
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||| |||||||||||| |||||||||||| ||||||    
T  43159642 aatgatatttgaacaaccattttttaacaatttttgtgacaa 43159601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 46148349 - 46148316
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaa 83  Q
    ||||||||||||| ||||||||||||||||||||    
T  46148349 gagcaatgatatttgaacaaccatttgttaacaa 46148316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 3239425 - 3239465
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgaca 94  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  3239425 aatgatattcgaacaaccattttatgacaatttttatgaca 3239465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 44649400 - 44649352
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||| ||||||||| ||||||||| || || ||||||||||||||||    
T  44649400 ttagagaaatgatatttgaacaaccaatttttgacaatttttatgacaa 44649352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18272525 - 18272476
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    |||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  18272525 gagcaatgttatttgaacaatcatttgctaacaatttttatgacaatctc 18272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 20712252 - 20712199
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||||| ||||    
T  20712252 ttagagctatgatatttgaacaaccatttgttaacaacttctatgacaacctcc 20712199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 12044513 - 12044463
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  12044513 gagcaatgatatttgaacaaccatgtgctaacaacttttatgacaacctcc 12044463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 23653780 - 23653826
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||| ||||| ||||||||||||| |||||| |||||||||||    
T  23653780 agagcaataatatttgaacaaccatttgctaacaacttttatgacaa 23653826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 6110429 - 6110470
Alignment:
Q  49 agagcaatgatattcgaacaaccatttgttaacaatttttat 90  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  6110429 agagcaatgatatttgaacaactatttgctaacaatttttat 6110470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 9188834 - 9188883
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    |||||||||||||  |||||||||||| |||||| |||||||| ||||||    
T  9188834 gagcaatgatatttaaacaaccatttgctaacaacttttatgataatctc 9188883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 19824126 - 19824171
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaatctc 99  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||    
T  19824126 aatgatatttgaacaaccatttgttaacaacttctatgacaatctc 19824171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 3960057 - 3960102
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||||||| ||||||||||||| |||||| ||| |||||||    
T  3960057 gagcaatgatatttgaacaaccatttgctaacaactttcatgacaa 3960102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 41460302 - 41460254
Alignment:
Q  47 ttagagcaatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    |||||||||| ||||| ||||||||||||| |||||| ||| |||||||    
T  41460302 ttagagcaataatatttgaacaaccatttgctaacaactttcatgacaa 41460254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 18179 - 18229
Alignment:
Q  50 gagcaatgatattcgaacaaccatttgttaacaatttttatgacaatctcc 100  Q
    ||||||||||||| ||||||||||||| | |||| ||||||||||| ||||    
T  18179 gagcaatgatatttgaacaaccatttgcttacaacttttatgacaacctcc 18229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 8476 - 8517
Alignment:
Q  54 aatgatattcgaacaaccatttgttaacaatttttatgacaa 95  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  8476 aatgatatttgaacaatcattttttaacaatttttatgacaa 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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