View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_10 (Length: 494)
Name: NF0795_low_10
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 78 - 494
Target Start/End: Complemental strand, 49069548 - 49069132
Alignment:
| Q |
78 |
agcacagataaatactaagctttgtgataagttttctgttggtcattatcctatgctcttttggggccctcctcctaaatttgtaggcggtagttgggaa |
177 |
Q |
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| T |
49069548 |
agcacagataaatattaagctttgtgataagttttctgttggtcattatcctatgctcttttggggccctcctcctaaatttgtaggcggtagttgggaa |
49069449 |
T |
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| Q |
178 |
cctaaacaagagaaaagtgatatacatgtgattgatgatgcacgcacagctgatcggttgcttaattggatcaacaagcaaatgtccaggtatgaggtat |
277 |
Q |
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| T |
49069448 |
cctaaacaagagaaaagtgatatacatgtgattgatgatgcacgcacagctgatcggttgcttaattggatcaacaagcaaatgtccaggtatgaggtat |
49069349 |
T |
|
| Q |
278 |
acatacattcattgtcaatgtagttgcgatattgtaggtgaacattttattcaagccagatgatgtatttgaattcattaatgcaacattatcaacttaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49069348 |
acatacattcattgtcaatgtagttgcgatattgtaggtgaacattttattcaagccagatgatgtatttgaattcattaatgcaacattatcaacttaa |
49069249 |
T |
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| Q |
378 |
aatgcactacaaactaatcagaatatgctagtgtctagaatcatgagaaagcatttctgttgcatctgatggaacataaaaatttgtcatgatataataa |
477 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49069248 |
aatgcactacaaactaatcagaatatactagtgtctagaatcatgagaaagcatttctgttgcatctgatggaacataaaaatttatcatgatataataa |
49069149 |
T |
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| Q |
478 |
tgaataatcaggcacgg |
494 |
Q |
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| T |
49069148 |
tgaataatcaggcacgg |
49069132 |
T |
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