View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0795_low_18 (Length: 445)
Name: NF0795_low_18
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_18 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 6942629 - 6942202
Alignment:
| Q |
16 |
atcgatgtcaagagagaaatggaaaaggaatcatatgcggatattatgtagtatttaaatggtaaacaaactgtaattaaattgggatatagttatgata |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
6942629 |
atcgatgtcaaaagagaaatggaaaaggaatcatatgcggatattatgtagtatttaaattgtaaacaaactataattaaattgggatatagttgtgata |
6942530 |
T |
|
| Q |
116 |
aaaatggtagctttacccctcaaaattgctaaacaccctaagctgaagaaacttcaatatcaaacctacacaatattaaatcaaagtacgagttaaaatt |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6942529 |
aaaatggtagctttatccctcaaaattgctaaacaccctaagctgaagaaacttcaatatcaaacctacacaatattaaatcaaagtacgagttaaaatt |
6942430 |
T |
|
| Q |
216 |
tattgtgaagttaaggattgtgcaattctgggtttgttaannnnnnnnngttttgagttgttaatgattttggttttcatcaggacatgaaagggaactt |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| | |
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| T |
6942429 |
tattgtgaagttaaggattatgcaattctgggtttgttaa-ttttatttgttttgagttgttaatgattttggttttcatcaaggcatgaaagggaacgt |
6942331 |
T |
|
| Q |
316 |
gaacacagagaagagaggacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacatatttaatctaacggtggaataaagtggttca |
415 |
Q |
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|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6942330 |
gaacacagagaatagaggacatggagcaaagattcagtgtggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttca |
6942231 |
T |
|
| Q |
416 |
ctggtgagagacttaattgatccctcacc |
444 |
Q |
| |
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| | ||| |||||||||||||||||||| |
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|
| T |
6942230 |
ccgatgaaggacttaattgatccctcacc |
6942202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 26240161 - 26240125
Alignment:
| Q |
409 |
tggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
26240161 |
tggttcaccggtgagggacttaattgatccctcaccc |
26240125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 423
Target Start/End: Original strand, 39946221 - 39946640
Alignment:
| Q |
9 |
gaataatatcgatgtcaagagagaaatggaaaaggaatcatatgcggatattatgtagtatttaaatggtaaacaaactgtaattaaattgggatatagt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39946221 |
gaataaaatcgatgtcaagagagaaatggaaaaggaatcatatgcggatattatgtagtatttaaattgtaaacaaactgtaattaaattgggatatagt |
39946320 |
T |
|
| Q |
109 |
tatgataaaaatggtagctttacccctcaaaattgctaaacaccctaagctgaagaaacttcaatatcaaacctacacaatattaaatcaaagtacgagt |
208 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39946321 |
tttgataaaaatggtagctttacccctcaaaattgctaaacaccctaagctgaagaaacttcaatatcaaacctgcacaatattaaatcaaagtacgagt |
39946420 |
T |
|
| Q |
209 |
taaaatttattgtgaagttaaggattgtgcaattctgggtttgttaannnnnnnnngttttgagttgttaatgattttggttttcatcaggacatgaaag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39946421 |
taaaatttattgtgaagttaaggattgtgcaattatgggtttgttaatttttttttgttttgagttgttaatgattttggttttcatcagggcatgaaag |
39946520 |
T |
|
| Q |
309 |
ggaacttgaacacagagaagag-----aggacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacatatttaatctaacggtggaa |
403 |
Q |
| |
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||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
39946521 |
ggaacgtgaacacagagaagagaagacatgacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacgtatttaatctaacggtgaaa |
39946620 |
T |
|
| Q |
404 |
taaagtggttcactggtgag |
423 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
39946621 |
ttaagtggttcactggtgag |
39946640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 16194800 - 16194365
Alignment:
| Q |
9 |
gaataatatcgatgtcaagagagaaatggaaaaggaatcatatgcggatattatgtagtatttaaatggtaaacaaactgtaattaaattgggatatagt |
108 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16194800 |
gaataaaatcgatggcaagagagaaatggaaaaagaatcatatgcagatattatgtagtatttaaattgtaaacaaactgtaattaaattgggatatagt |
16194701 |
T |
|
| Q |
109 |
tatgataaaaatggtagctttacccctcaaaattgctaaacaccctaagctgaagaaacttcaatatcaaacctacacaatattaaatcaaagtacgagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
16194700 |
tatgataaaaatggtagctttacccctcaaaattgctaaaaaccctaagctgaagaaacttcaatatcaaacctacacaatattaaatcaaagcacgagt |
16194601 |
T |
|
| Q |
209 |
taaaatttattgtgaagttaaggattgtgcaattctgggtttgttaannnnnnnnngttttgagttgttaatgattttggttttcatcaggacatgaaag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16194600 |
taaaatttattgtgaagttaaggattgtgcagttctgggtttgttaa-ttttttttgttttgagttgttaatgattttggttttcatcagggcatgaaag |
16194502 |
T |
|
| Q |
309 |
ggaacttgaacac--agagaagagaggacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacatatttaatctaacggtggaataa |
406 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |
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|
| T |
16194501 |
ggaacgtgaacacagagagaaaagaggacatggagcaaagatccagtgtggtaataagtaatgaaattctagagacatatttaatctgacggtggaataa |
16194402 |
T |
|
| Q |
407 |
agtggttcactggtgagagacttaattgatccctcac |
443 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16194401 |
agtggttcactgatgatggacttaattgatccctcac |
16194365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 29595541 - 29595629
Alignment:
| Q |
355 |
tggtaataagtaatgaaatcttgtagacatatttaatctaacggtggaataaagtggttcactggtgagagacttaattgatccctcac |
443 |
Q |
| |
|
|||| |||| |||||| ||||| ||| | |||||||||||| ||| |||||| |||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
29595541 |
tggttataaataatgagatcttatagtcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcac |
29595629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 39945914 - 39945855
Alignment:
| Q |
386 |
tttaatctaacggtggaataaagtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| | |||| |||||||||| |||||||||| |
|
|
| T |
39945914 |
tttaatctgacggtggaataaagtggtacaccgatgagggacttaattggtccctcaccc |
39945855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 16195107 - 16195166
Alignment:
| Q |
386 |
tttaatctaacggtggaataaagtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
16195107 |
tttaatctgacggtggaataatgtggtacaccagtgatggacttaattgatccctcaccc |
16195166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 54308525 - 54308464
Alignment:
| Q |
384 |
tatttaatctaacggtggaataaagtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
54308525 |
tatttaatctaacggtcaaaataagtggttcaccggtgagggacttaattgaaccctcaccc |
54308464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Original strand, 30581265 - 30581303
Alignment:
| Q |
407 |
agtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
30581265 |
agtggttcactggtgagggacttaattgaaccctcaccc |
30581303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Original strand, 14527575 - 14527613
Alignment:
| Q |
407 |
agtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
14527575 |
agtggttcaccggtgagggacttaattgatccctcaccc |
14527613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 56226534 - 56226476
Alignment:
| Q |
384 |
tatttaatctaacggtggaataaagtggttcactggtgagagacttaattgatccctca |
442 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
56226534 |
tattaaatctaatggttaaataaagtggtacatcggtgagagacttaattgatccctca |
56226476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 51386504 - 51386467
Alignment:
| Q |
408 |
gtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
51386504 |
gtggttcactggtgagggacttaattgaaccctcaccc |
51386467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 24666176 - 24666140
Alignment:
| Q |
409 |
tggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24666176 |
tggttcaccggtgagggacttaattgatccctcaccc |
24666140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 34450882 - 34450826
Alignment:
| Q |
389 |
aatctaacggtggaataaagtggttcactggtgagagacttaattgatccctcaccc |
445 |
Q |
| |
|
||||||| ||||| ||||||| | ||| |||||| ||||||||||||||||||||| |
|
|
| T |
34450882 |
aatctaatggtggcttaaagtgctccaccggtgagggacttaattgatccctcaccc |
34450826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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