View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_19 (Length: 427)
Name: NF0795_low_19
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 392
Target Start/End: Original strand, 31206312 - 31206676
Alignment:
| Q |
30 |
gtaatgaggtgaaaggaaatgatgatttcatgcaagttgcctcgcagaaaaaattacgaggaagcagaggcactattggtgaaaagttaagtcatggact |
129 |
Q |
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| T |
31206312 |
gtaatgaggtgaaaggaaatgatgatttcatgcaagttgcctcacagaaaaa-ttacgaggaagcagaggcactagtggtgaaaagttaagtcatggact |
31206410 |
T |
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| Q |
130 |
ctggaagctcctttaacaacaagttgagactctaaggctaaatgaaggtggagttgttcaccttataaataaaacggtttgtaatgttcaagatatgtgt |
229 |
Q |
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| T |
31206411 |
ctggaagctc-tttaacaacaagttgagactctaaggctagatgaaggtggagttgttcaccttgaaaacaaaacggtttgtaatgttcaagatatgtgt |
31206509 |
T |
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| Q |
230 |
tc----cgtatgtcttacgatgtttgccaaccatatgttacttttgcaagatgtgaggtgtgttcttgaacttaacatgatttgttatcaatcaacatgt |
325 |
Q |
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| T |
31206510 |
tcagtaagtatgtcttacgatgtttgccaaccatgagttacttttgcaagatgtgaggtgtgttcttgaacttaacatgatttgttatcaatcaacatgt |
31206609 |
T |
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| Q |
326 |
ttgaactaatagttaactttttcaagtataataaaagaggtaaaattctaagaaaaattataaacta |
392 |
Q |
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| T |
31206610 |
ttgaactaatagttaactttttcaagtaaaataaaagaggtaaaattctaagaaaaattataaacta |
31206676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 2239226 - 2239196
Alignment:
| Q |
269 |
ttgcaagatgtgaggtgtgttcttgaactta |
299 |
Q |
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| T |
2239226 |
ttgcaagatgtgaggtgtgttcttgaactta |
2239196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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