View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_2 (Length: 611)
Name: NF0795_low_2
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 76 - 600
Target Start/End: Complemental strand, 386487 - 385963
Alignment:
| Q |
76 |
cttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
175 |
Q |
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| T |
386487 |
cttccaaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
386388 |
T |
|
| Q |
176 |
tcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgct |
275 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
386387 |
tcaatacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtgggccttatgct |
386288 |
T |
|
| Q |
276 |
ttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttt |
375 |
Q |
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| T |
386287 |
ttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatgaaatcaacttt |
386188 |
T |
|
| Q |
376 |
tgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattattt |
475 |
Q |
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| T |
386187 |
tgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattattt |
386088 |
T |
|
| Q |
476 |
gttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacat |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386087 |
gttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacat |
385988 |
T |
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| Q |
576 |
ccacagaatatcccatggtcttcat |
600 |
Q |
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| T |
385987 |
ccacagaatatcccatcgtcttcat |
385963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 76 - 600
Target Start/End: Original strand, 38729055 - 38729579
Alignment:
| Q |
76 |
cttccaaacacatcaagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
175 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729055 |
cttccaaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataa |
38729154 |
T |
|
| Q |
176 |
tcaatactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgct |
275 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
38729155 |
tcaatactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcgccttatgct |
38729254 |
T |
|
| Q |
276 |
ttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38729255 |
ttgttgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagtatcaaatcaacttt |
38729354 |
T |
|
| Q |
376 |
tgcagcggagttaacatatgtttcaagaagtggcttggctgactcgtatatcccattcttcatgcatgactcaaacaactgtcggattataaaattattt |
475 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
38729355 |
tgcagcggagttcacatatgtttcaagaagaggcttggctgattcgtatatcccatttttcatgcacgactcaaacaactgcctgattataaaattattg |
38729454 |
T |
|
| Q |
476 |
gttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacat |
575 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729455 |
gttctgatccctgaggaacccatgaaacgtagccatctcaaagcaagatcgactgaaccttccttgatatacaccatcaaaacatcactagctgtcacat |
38729554 |
T |
|
| Q |
576 |
ccacagaatatcccatggtcttcat |
600 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
38729555 |
ccacagaatatcccattgtcttcat |
38729579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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