View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_25 (Length: 389)
Name: NF0795_low_25
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 31319206 - 31319548
Alignment:
| Q |
14 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagagagttaataatgtgaaccaaagagctcaatcaaaagct |
113 |
Q |
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| T |
31319206 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagag---taataatgtgaaccaaagagctcaatcaaaagct |
31319302 |
T |
|
| Q |
114 |
gatttggccaataagaaaagtgctaaatttcctgtcaatacaattgatgctataactgttaatgcacaagtacaccctcacattgcagcaattggtaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319303 |
gatttggccaataagaaaagtgctaaatttcctgtcaatacagttgatgctataactgttaatgcacaagtacaccctcacattgcagcaattggtaata |
31319402 |
T |
|
| Q |
214 |
agtctgctaaggtctcttctcatgatgacattcaggagggccccttttgtttcacctgatgattttgaggaaggtgaaatatcagctcctgaaagcaatg |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31319403 |
agtctgctaaggtatcttctcatgatgacattcagga-ggccccttttgtttcaactgatgattttgaggaaggtgaagtatcagctcctgaaagcaatg |
31319501 |
T |
|
| Q |
314 |
aaattgcagtcctcaacactgaacttcatgctaatgatcagagccag |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319502 |
aaattgcagtcctcaacactgaacttcatgctaatgatcagagccag |
31319548 |
T |
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