View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_26 (Length: 386)

Name: NF0795_low_26
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_26
NF0795_low_26
[»] chr3 (8 HSPs)
chr3 (1-358)||(34729448-34729806)
chr3 (4-85)||(3537082-3537163)
chr3 (8-82)||(18257802-18257876)
chr3 (4-84)||(49183567-49183647)
chr3 (4-84)||(51684499-51684579)
chr3 (11-84)||(47789579-47789652)
chr3 (36-85)||(48657142-48657191)
chr3 (8-84)||(53620164-53620240)
[»] chr4 (7 HSPs)
chr4 (10-84)||(52636636-52636710)
chr4 (7-84)||(56426837-56426914)
chr4 (4-90)||(49668229-49668315)
chr4 (11-84)||(38365904-38365977)
chr4 (4-84)||(38136960-38137040)
chr4 (11-84)||(7182324-7182397)
chr4 (51-84)||(35959073-35959106)
[»] chr7 (8 HSPs)
chr7 (4-84)||(38505460-38505540)
chr7 (4-85)||(32650506-32650587)
chr7 (4-84)||(4058265-4058345)
chr7 (4-83)||(15749075-15749154)
chr7 (4-84)||(16805693-16805773)
chr7 (4-84)||(30080847-30080927)
chr7 (51-84)||(41471380-41471413)
chr7 (51-83)||(19791563-19791595)
[»] chr1 (11 HSPs)
chr1 (4-84)||(36886745-36886825)
chr1 (4-84)||(27255084-27255164)
chr1 (11-84)||(7401660-7401733)
chr1 (51-84)||(17556543-17556576)
chr1 (11-84)||(40707331-40707404)
chr1 (11-84)||(43572084-43572157)
chr1 (51-84)||(45565356-45565389)
chr1 (51-84)||(52073621-52073654)
chr1 (244-280)||(13025757-13025793)
chr1 (4-84)||(29091962-29092042)
chr1 (8-84)||(38795459-38795535)
[»] chr5 (5 HSPs)
chr5 (4-84)||(35683599-35683679)
chr5 (51-84)||(1935237-1935270)
chr5 (51-84)||(13569264-13569297)
chr5 (51-84)||(32824538-32824571)
chr5 (26-83)||(29709417-29709476)
[»] chr2 (11 HSPs)
chr2 (4-84)||(4003303-4003383)
chr2 (4-84)||(11514919-11514999)
chr2 (4-83)||(15555471-15555550)
chr2 (10-84)||(16519220-16519294)
chr2 (10-84)||(16625913-16625987)
chr2 (4-81)||(34757483-34757560)
chr2 (4-84)||(21625999-21626079)
chr2 (11-84)||(18780257-18780330)
chr2 (8-85)||(39180954-39181030)
chr2 (51-84)||(43572721-43572754)
chr2 (51-83)||(37194142-37194174)
[»] chr6 (4 HSPs)
chr6 (4-83)||(1567157-1567236)
chr6 (10-84)||(26713738-26713812)
chr6 (51-84)||(32719548-32719581)
chr6 (4-84)||(12779392-12779471)
[»] scaffold1163 (1 HSPs)
scaffold1163 (4-84)||(1933-2013)
[»] chr8 (4 HSPs)
chr8 (16-84)||(3635614-3635682)
chr8 (9-85)||(31149798-31149874)
chr8 (51-84)||(79787-79820)
chr8 (11-84)||(3404706-3404779)
[»] scaffold0248 (1 HSPs)
scaffold0248 (51-90)||(369-408)
[»] scaffold0388 (1 HSPs)
scaffold0388 (51-85)||(6939-6973)
[»] scaffold0051 (2 HSPs)
scaffold0051 (51-84)||(6931-6964)
scaffold0051 (51-84)||(7914-7947)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 34729448 - 34729806
Alignment:
Q  1 tcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagtgttaaggaatttcta 100  Q
    ||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34729448 tcaattttcctgtacttcttccacttgctcattttttttttcaaaaattctcccctcccttcacctccaaactcgcaaacaaagtgttaaggaatttcta 34729547  T
Q  101 taaaactcaagggttgtacttgtttcatggtttcnnnnnnnntcccgatttaagttttccttgcaatcttattttcgtgaatattatttcacaaatgtgc 200  Q
    ||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34729548 taaaactcaagggttgtgcttgtttcatggtttcaaaaaaaatcccgatttaagttttccttgcaatcttattttcgtgaatattatttcacaaatgtgc 34729647  T
Q  201 ttgccaaaattcctaaacattaatctctttagtttgactgttgaacttgaaagttatttgaggtatcgactaatagctctcaacaacgaatctcgttcgt 300  Q
    |||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34729648 ttgccaaaattcataaacattgatctttttagtttgactgtttaacttgaaagttatttgaggtatcgactaatagctctcaacaacgaatctcgttcgt 34729747  T
Q  301 caaaaaattatgttgtgattttcttaactattct-aagagtgtttaggatggtattttt 358  Q
    |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||    
T  34729748 caaaaaattatgttgtgattttcttaactattctaaagagtgtttggtatggtattttt 34729806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3537163 - 3537082
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    ||||||||||| ||||||||| | |||||| |||||||| |||    |||||||||||| ||||||||||||||||||||||    
T  3537163 attttcctctatttcttccacttactcattccttttttctaaagccttcccctcccttcccctccaaactcgcaaacaaagt 3537082  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 18257802 - 18257876
Alignment:
Q  8 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaa 82  Q
    ||||||| ||||||||  || ||||||| |||||| |||| | |||||||| ||| |||||||||||||||||||    
T  18257802 tcctctatttcttccatttgttcatttcctttttccaaaactctcccctcctttcccctccaaactcgcaaacaa 18257876  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 49183647 - 49183567
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||||| ||||||||| |||||||| ||||||||  |||   |||||||| ||| ||||||||||| |||||||||    
T  49183647 atttttctctatttcttccacttgctcattccttttttcccaaaccttcccctccattcccctccaaactcacaaacaaag 49183567  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 51684579 - 51684499
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| || ||||| ||||||||  || |  ||||||| |||| |||||||||||||||| ||||    
T  51684579 attttcctctatttcttccacttgttcattccttttttcccaagtcttcccctctcttcccctccaaactcgcaaataaag 51684499  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 47789579 - 47789652
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| | ||   |||||||||||| ||||||||||| |||||||||    
T  47789579 tctatttcttccacttgctccttccttttttctacaaccctcccctcccttcccctccaaactcccaaacaaag 47789652  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 48657142 - 48657191
Alignment:
Q  36 ttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    ||||||| ||| |||||| |||||||||| |||||||||||||| |||||    
T  48657142 ttttttccaaagttatcctctcccttcacatccaaactcgcaaataaagt 48657191  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 53620240 - 53620164
Alignment:
Q  8 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||| |||| |||| ||||| || |||||||| |||    || ||||||||| |||||||||||||||||||||    
T  53620240 tcctctatttctcccacttgctccttccttttttccaaagccctcacctcccttcccctccaaactcgcaaacaaag 53620164  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 52636710 - 52636636
Alignment:
Q  10 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||||||||| |||||| | |||||||| |||||| |||| ||||||| |||||||||||||||||||||    
T  52636710 ctctatttcttccacttgctcagtccttttttccaaaattctcccatcccttcccctccaaactcgcaaacaaag 52636636  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 56426837 - 56426914
Alignment:
Q  7 ttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||| ||||||||| |||||||| |||||||  ||| |  |||||||||||||||| || ||||||||||||||    
T  56426837 ttcctctatttcttccacttgctcattcctttttttcaaagtcctcccctcccttcaccttcagactcgcaaacaaag 56426914  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 49668229 - 49668315
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagtgttaa 90  Q
    ||||| ||||| ||||||||| |||||||| ||||||||  |||   ||||||| ||||  |||||||||||||||||||| |||||    
T  49668229 atttttctctatttcttccacttgctcattccttttttctcaaaccttcccctcacttcctctccaaactcgcaaacaaagcgttaa 49668315  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 38365977 - 38365904
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| |||| | ||||||||| || ||||||||||| |||||||||    
T  38365977 tctatttcttccacttgctccttccttttttctaaaactctcccctcccctcccctccaaactcccaaacaaag 38365904  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 38136960 - 38137040
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| | || ||| ||||||||  ||    |||||||||||| |||||||||||||||||||||    
T  38136960 attttcctctatttcttccacttacttattccttttttctcaagccttcccctcccttcccctccaaactcgcaaacaaag 38137040  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 7182324 - 7182397
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  7182324 tctatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 7182397  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 35959106 - 35959073
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  35959106 tcccctcccttcccctccaaactcgcaaacaaag 35959073  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 38505460 - 38505540
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| |||||||| ||||||||  ||    |||||||||||| |||||||||||||||||||||    
T  38505460 attttcctctatttcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcgcaaacaaag 38505540  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 32650506 - 32650587
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    ||||||||||| ||||||||| ||||||||  |||||||  ||| | || |||| |||| ||||||||||||||||||||||    
T  32650506 attttcctctatttcttccacttgctcattctttttttcccaaactttctcctctcttcccctccaaactcgcaaacaaagt 32650587  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 4058265 - 4058345
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| | || |||| |||||||  || |  |||||||||||| |||||||||||||||||||||    
T  4058265 attttcctctatttcttccacttacttattttttttttcccaagtcttcccctcccttcccctccaaactcgcaaacaaag 4058345  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 15749075 - 15749154
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 83  Q
    |||||| |||| ||||||||| |||||||| ||||||||  ||    |||||||||||| ||||||||||||||||||||    
T  15749075 attttcttctatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaa 15749154  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 16805693 - 16805773
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||  ||||||||| | || ||| ||||||||  || |  |||||||||||| |||||||||||||||||||||    
T  16805693 attttcctctctttcttccacttacttattccttttttcccaagtcttcccctcccttcccctccaaactcgcaaacaaag 16805773  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 30080927 - 30080847
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| ||||| || ||||||||  || |  |||||||||||| ||| |||||||||||| ||||    
T  30080927 attttcctctatttcttccacttgctccttccttttttctcaagtcttcccctcccttctcctacaaactcgcaaataaag 30080847  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 41471413 - 41471380
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  41471413 tcccctcccttctcctccaaactcgcaaacaaag 41471380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 19791595 - 19791563
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaa 83  Q
    |||||||||||| ||||||||||||||||||||    
T  19791595 tcccctcccttcccctccaaactcgcaaacaaa 19791563  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 36886825 - 36886745
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| |||||||| ||||||||  ||    |||||||||||| |||||||||||||||||||||    
T  36886825 attttcctctatttcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcgcaaacaaag 36886745  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 27255164 - 27255084
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| |||||||| ||||||||  || |  ||||||  |||| |||||||||||||||||||||    
T  27255164 attttcctctatttcttccacttgctcattccttttttctcaagtcttcccctttcttcccctccaaactcgcaaacaaag 27255084  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 7401660 - 7401733
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||||||||| || |||||||| ||||   ||||||||| || | ||||||||| |||||||||    
T  7401660 tctatttcttccacctgctccttccttttttctaaaaccctcccctcccctcccttccaaactcccaaacaaag 7401733  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 17556576 - 17556543
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  17556576 tcccctcccttcccctccaaactcgcaaacaaag 17556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 40707331 - 40707404
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| |||| | | ||||| |||| ||||||||||| |||||||||    
T  40707331 tctatttcttccacttgctccttccttttttccaaaactcttccctctcttcccctccaaactcccaaacaaag 40707404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 43572084 - 43572157
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| |||||||| |||||||  |||| | | ||||||| || ||||||||||| |||||||||    
T  43572084 tctatttcttccacttgctcattcctttttttcaaaactctgccctcccctcccctccaaactcccaaacaaag 43572157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 45565356 - 45565389
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  45565356 tcccctcccttcccctccaaactcgcaaacaaag 45565389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 52073621 - 52073654
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  52073621 tcccctcccttcccctccaaactcgcaaacaaag 52073654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 13025757 - 13025793
Alignment:
Q  244 aacttgaaagttatttgaggtatcgactaatagctct 280  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  13025757 aacttgaaagttatttgatgtatcaactaatagctct 13025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 29092042 - 29091962
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| | || |||  |||||||  |||   ||||||||||||  ||||||||||||||||||||    
T  29092042 attttcctctatttcttccacttacttattcattttttcccaaaccttcccctcccttcctctccaaactcgcaaacaaag 29091962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 38795459 - 38795535
Alignment:
Q  8 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||| ||||||||| |||||||| ||||||||  || |  |||| | ||||| |||| ||||||||||||||||    
T  38795459 tcctctatttcttccacttgctcattccttttttctcaagtcttccctttccttctcctctaaactcgcaaacaaag 38795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 35683599 - 35683679
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||| |||| ||||||||| |||||||| ||||||||  |||   |||||||||||| ||| |||||||||||||||||    
T  35683599 attttcttctatttcttccacttgctcattccttttttcctaaaccttcccctcccttccccttcaaactcgcaaacaaag 35683679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 1935237 - 1935270
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  1935237 tcccctcccttcccctccaaactcgcaaacaaag 1935270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 13569297 - 13569264
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  13569297 tcccctcccttcccctccaaactcgcaaacaaag 13569264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 32824571 - 32824538
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  32824571 tcccctcccttctcctccaaactcgcaaacaaag 32824538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 29709476 - 29709417
Alignment:
Q  26 tgctcatttcttttttcaaaaattatcccc--tcccttcacctccaaactcgcaaacaaa 83  Q
    ||||| ||||||||||| |||| | |||||  ||||||| ||||||||||||||||||||    
T  29709476 tgctcctttcttttttccaaaactctcccccctcccttctcctccaaactcgcaaacaaa 29709417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 4003383 - 4003303
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||    ||||||||||||  |||||||||| |||||||||    
T  4003383 attttcctctatttcttccacttgctcattccttttttccaaagccctcccctcccttccactccaaactcacaaacaaag 4003303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11514999 - 11514919
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||| |||| ||||||||| |||||||| ||||||||  ||    |||||||||||| |||||||||||||||||||||    
T  11514999 attttcttctatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaag 11514919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 15555471 - 15555550
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 83  Q
    |||||| |||| ||||||||| |||||||| ||||||||  || |  |||||||||||  ||||||||||||||||||||    
T  15555471 attttcttctatttcttccacttgctcattccttttttcctaagtcttcccctccctttccctccaaactcgcaaacaaa 15555550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 16519220 - 16519294
Alignment:
Q  10 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||||||||| ||||| || |||||||| ||||   ||||||| |||| |||||||||||||||||||||    
T  16519220 ctctatttcttccacttgctccttccttttttccaaaaccctcccctctcttcccctccaaactcgcaaacaaag 16519294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 16625913 - 16625987
Alignment:
Q  10 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||||||||| |||||  | |||||||| ||||   |||||||||||| |||||||||||||||||||||    
T  16625913 ctctatttcttccacttgctccatccttttttccaaaaccctcccctcccttcccctccaaactcgcaaacaaag 16625987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 34757560 - 34757483
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaaca 81  Q
    ||||| ||||| ||||| |||||||||||| ||||||||  |||   |||||||||||| |||||||| |||||||||    
T  34757560 atttttctctatttctttcacctgctcattccttttttcccaaaccttcccctcccttcccctccaaattcgcaaaca 34757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 21626079 - 21625999
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| |||||| || |||||||| |||||||   ||||  |||||||| ||| |||||||| ||||||||||||    
T  21626079 attttcctctatttcttctacttgctcattcctttttttccaaatcttcccctccattcccctccaaattcgcaaacaaag 21625999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 18780330 - 18780257
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  18780330 tctatttcttccacgtgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 18780257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 39181030 - 39180954
Alignment:
Q  8 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    ||||||| ||||||||| | ||| || |||||||| ||| |  ||||||||||||  |||||||||||||||||||||    
T  39181030 tcctctatttcttccacttactccttccttttttccaaa-tcctcccctcccttcctctccaaactcgcaaacaaagt 39180954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 43572721 - 43572754
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  43572721 tcccctcccttcccctccaaactcgcaaacaaag 43572754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 37194174 - 37194142
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaa 83  Q
    |||||||||||| ||||||||||||||||||||    
T  37194174 tcccctcccttcccctccaaactcgcaaacaaa 37194142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 1567236 - 1567157
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 83  Q
    |||||| |||| ||||||||| |||||||| ||||||||  ||    |||||||||||| ||||||||||||||||||||    
T  1567236 attttcttctatttcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaa 1567157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26713812 - 26713738
Alignment:
Q  10 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||||||||| ||||| || |||| ||| ||||   |||||||||||| |||||||||||||||||||||    
T  26713812 ctctatttcttccacttgctccttcctttattccaaaaccctcccctcccttcccctccaaactcgcaaacaaag 26713738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 32719548 - 32719581
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  32719548 tcccctcccttcccctccaaactcgcaaacaaag 32719581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 12779471 - 12779392
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||||||||| || ||| || |||||||| |||||||   |||   |||||||||||||||||| |||||||||||||||    
T  12779471 attttcctctatttattctacttgctcattcctttttttccaaaccttcccctcccttcacctcc-aactcgcaaacaaag 12779392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 2013 - 1933
Alignment:
Q  4 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||| |||| ||||||||| ||||| || |||||||  ||| |  |||| ||||||| |||||||||||||||||||||    
T  2013 attttcttctatttcttccacttgctccttcctttttttcaaagtcttcccttcccttcccctccaaactcgcaaacaaag 1933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 3635614 - 3635682
Alignment:
Q  16 ttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    ||||| ||| ||||||||||||||||| ||||   || | ||||||| |||||||||||||||||||||    
T  3635614 ttctttcacttgctcatttcttttttccaaaaccctctcatcccttcccctccaaactcgcaaacaaag 3635682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 31149874 - 31149798
Alignment:
Q  9 cctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    |||||| ||||||||| ||||||||  | ||||| ||||   ||| |||||||| ||||||||||||||||||||||    
T  31149874 cctctatttcttccacttgctcattcatgttttccaaaacactccactcccttcccctccaaactcgcaaacaaagt 31149798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 79787 - 79820
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  79787 tcccctcccttcccctccaaactcgcaaacaaag 79820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 3404706 - 3404779
Alignment:
Q  11 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  3404706 tctatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 3404779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 369 - 408
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaagtgttaa 90  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  369 tcccctcccttcccctccaaactcgcaaacaaagcgttaa 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 6973 - 6939
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaagt 85  Q
    |||||||||||| ||||||||||||||||||||||    
T  6973 tcccctcccttcccctccaaactcgcaaacaaagt 6939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 6931 - 6964
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  6931 tcccctcccttcccctccaaactcgcaaacaaag 6964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 7914 - 7947
Alignment:
Q  51 tcccctcccttcacctccaaactcgcaaacaaag 84  Q
    |||||||||||| |||||||||||||||||||||    
T  7914 tcccctcccttcccctccaaactcgcaaacaaag 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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