View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_29 (Length: 371)

Name: NF0795_low_29
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_29
NF0795_low_29
[»] chr1 (13 HSPs)
chr1 (82-361)||(6942049-6942327)
chr1 (217-268)||(16449548-16449599)
chr1 (217-268)||(16459122-16459173)
chr1 (224-271)||(26240114-26240161)
chr1 (219-272)||(12449312-12449365)
chr1 (221-266)||(27746164-27746209)
chr1 (213-261)||(47264051-47264098)
chr1 (224-271)||(26240872-26240919)
chr1 (224-334)||(27745556-27745666)
chr1 (217-258)||(31171982-31172023)
chr1 (221-302)||(32772097-32772178)
chr1 (224-272)||(2261543-2261591)
chr1 (228-272)||(14166907-14166951)
[»] chr5 (15 HSPs)
chr5 (226-358)||(16194354-16194486)
chr5 (257-358)||(39946539-39946640)
chr5 (224-325)||(29595541-29595642)
chr5 (219-294)||(16195107-16195182)
chr5 (223-271)||(35524878-35524926)
chr5 (217-268)||(2029051-2029102)
chr5 (235-294)||(39945855-39945914)
chr5 (223-272)||(23253486-23253535)
chr5 (219-271)||(4095107-4095158)
chr5 (223-262)||(27345929-27345968)
chr5 (217-272)||(39937906-39937961)
chr5 (224-262)||(20476126-20476164)
chr5 (217-254)||(40372178-40372215)
chr5 (226-270)||(23257969-23258013)
chr5 (224-268)||(33086729-33086773)
[»] chr3 (15 HSPs)
chr3 (225-296)||(54308454-54308525)
chr3 (217-274)||(3583998-3584055)
chr3 (219-268)||(47571191-47571240)
chr3 (224-268)||(49349676-49349720)
chr3 (222-271)||(20807935-20807984)
chr3 (213-261)||(2226711-2226759)
chr3 (224-268)||(47571943-47571987)
chr3 (224-268)||(53344745-53344789)
chr3 (221-296)||(18745346-18745421)
chr3 (224-271)||(49350271-49350318)
chr3 (224-262)||(47808362-47808400)
chr3 (223-276)||(53502-53555)
chr3 (224-273)||(15287567-15287616)
chr3 (223-271)||(4706957-4707005)
chr3 (228-260)||(43479523-43479555)
[»] chr4 (22 HSPs)
chr4 (221-271)||(24666126-24666176)
chr4 (224-273)||(14527575-14527624)
chr4 (222-272)||(51386454-51386504)
chr4 (222-296)||(56226460-56226534)
chr4 (216-273)||(51387124-51387181)
chr4 (224-271)||(18362935-18362982)
chr4 (224-291)||(34450815-34450882)
chr4 (217-268)||(34451441-34451492)
chr4 (224-271)||(36599944-36599991)
chr4 (222-273)||(45393979-45394030)
chr4 (224-294)||(25725786-25725856)
chr4 (224-266)||(34941502-34941544)
chr4 (223-272)||(13924792-13924841)
chr4 (218-274)||(6056997-6057053)
chr4 (220-272)||(18363653-18363705)
chr4 (225-273)||(20143280-20143328)
chr4 (218-262)||(21527035-21527079)
chr4 (224-260)||(35605991-35606027)
chr4 (220-272)||(36599223-36599275)
chr4 (226-274)||(38519185-38519233)
chr4 (214-262)||(47157389-47157437)
chr4 (224-296)||(56227031-56227103)
[»] chr8 (14 HSPs)
chr8 (215-268)||(42094000-42094053)
chr8 (224-275)||(4402284-4402335)
chr8 (224-271)||(22632969-22633016)
chr8 (225-271)||(22632323-22632369)
chr8 (206-272)||(27243428-27243494)
chr8 (206-272)||(27255003-27255069)
chr8 (222-263)||(9277791-9277832)
chr8 (224-273)||(26847720-26847769)
chr8 (215-271)||(16911047-16911103)
chr8 (224-272)||(26847097-26847145)
chr8 (214-262)||(42663267-42663315)
chr8 (224-294)||(31713846-31713916)
chr8 (224-262)||(42094754-42094792)
chr8 (219-271)||(35399944-35399996)
[»] chr7 (19 HSPs)
chr7 (224-273)||(30581265-30581314)
chr7 (216-260)||(17114137-17114181)
chr7 (224-295)||(3314955-3315026)
chr7 (224-271)||(41358972-41359019)
chr7 (221-271)||(36611495-36611545)
chr7 (229-273)||(36611556-36611600)
chr7 (224-272)||(41617981-41618029)
chr7 (226-262)||(44876944-44876980)
chr7 (224-271)||(28007157-28007204)
chr7 (219-262)||(41358306-41358349)
chr7 (224-262)||(30580635-30580673)
chr7 (224-274)||(35892301-35892351)
chr7 (208-271)||(41617174-41617239)
chr7 (226-255)||(40426853-40426882)
chr7 (225-262)||(46676268-46676305)
chr7 (218-262)||(3315473-3315517)
chr7 (233-273)||(36611737-36611777)
chr7 (224-272)||(41965777-41965825)
chr7 (214-262)||(46491698-46491746)
[»] chr2 (9 HSPs)
chr2 (224-261)||(44987550-44987587)
chr2 (224-273)||(20606920-20606969)
chr2 (221-272)||(127030-127081)
chr2 (224-255)||(7754984-7755015)
chr2 (224-254)||(10365525-10365555)
chr2 (224-268)||(127739-127783)
chr2 (222-274)||(1141298-1141350)
chr2 (224-272)||(10173936-10173984)
chr2 (224-260)||(44986812-44986848)
[»] chr6 (3 HSPs)
chr6 (223-271)||(16718995-16719043)
chr6 (224-273)||(13084878-13084927)
chr6 (218-262)||(34423581-34423625)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 6942049 - 6942327
Alignment:
Q  82 gtatttcttttaattttagggatgtttcaagaatttaaaattattcttaggaatattgtacatgaaaatataaagataaaaattcaattcctaaatannn 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  6942049 gtatttcttttaattttagggaagtttcaagaatttaaaattattcttaggaatattgtacatgaaaatataaagataaaaattcaattcctaaatattt 6942148  T
Q  182 nnnnngagaaaacgtaagtttgtaattttttatttaaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattcca 281  Q
         || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||| | ||||||||||||||||||    
T  6942149 tttt-gaaaaaacgtaagtttgtaattttttatttaaaaaatagtggattctaaggtgagggatcaattaagtccttcatcggtgaaccactttattcca 6942247  T
Q  282 ccgttagattaaatatgtctacaagatttcattacttattaccacactggatctttgctccatgtcctctcttctctgtg 361  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  6942248 ccgttagattaaatatgtctacaagatttcaatacttattaccacactgaatctttgctccatgtcctctattctctgtg 6942327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 16449548 - 16449599
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  16449548 aaaaaatggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 16459122 - 16459173
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  16459122 aaaaaatggtggattctagggtgagggttcaattaagtccctcaccggtgaa 16459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 26240114 - 26240161
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 12449365 - 12449312
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||| |||||||| ||||||||||||||||||||||| |||||| ||| |||||    
T  12449365 aaaacggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 27746209 - 27746164
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtg 266  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  27746209 aatggtggattctagcgtgagggttcaattaagtccctcaccagtg 27746164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 47264098 - 47264051
Alignment:
Q  213 atttaaaaaatggtggattctagggtgagggatcaattaagtctctcac 261  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  47264098 atttaaaaaa-ggtggattctaaggtgagggatcaattaattctctcac 47264051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 26240919 - 26240872
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||| ||||||||||| |||||| ||| ||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 27745556 - 27745666
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaatatgtctacaagatttcattacttattac 323  Q
    ||||||||||| |||||||| ||||||||||| ||||||  |  ||||||||| |  | | |||||||||||| ||||| | ||||||| || | || ||    
T  27745556 ggtggattctaaggtgagggttcaattaagtccctcaccgatataccactttaattgatcattagattaaataagtctatatgatttcaatagtcataac 27745655  T
Q  324 cacactggatc 334  Q
    |||||| ||||    
T  27745656 cacactcgatc 27745666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 31172023 - 31171982
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctct 258  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  31172023 aaaaaatggtggcttttagggtgagggagcaattaagtctct 31171982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 32772097 - 32772178
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaatatgtcta 302  Q
    |||||| ||||||| |||||||| ||||||||| | ||||||  || ||||||||| |  ||| |||||||||||| |||||    
T  32772097 aatggtagattctaaggtgagggctcaattaagcccctcaccgatgtaccactttaattgaccattagattaaataagtcta 32772178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 2261591 - 2261543
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||| ||| ||||||||||| ||||||||| | ||||||||||||||||    
T  2261591 ggtgaattttagggtgagggttcaattaagcccctcaccagtgaaccac 2261543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 14166951 - 14166907
Alignment:
Q  228 gattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||||||||||||||| ||||||||||| |||||| || ||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggtaaaccac 14166907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 16194354 - 16194486
Alignment:
Q  226 tggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaatatgtctacaagatttcattacttattacca 325  Q
    |||||| ||| |||||||||||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||  |  |||||||||||||||||||    
T  16194354 tggattatagagtgagggatcaattaagtccatcatcagtgaaccactttattccaccgtcagattaaatatgtctctagaatttcattacttattacca 16194453  T
Q  326 cactggatctttgctccatgtcctctcttctct 358  Q
    |||||||||||||||||||||||||| ||||||    
T  16194454 cactggatctttgctccatgtcctcttttctct 16194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 257 - 358
Target Start/End: Complemental strand, 39946640 - 39946539
Alignment:
Q  257 ctcaccagtgaaccactttattccaccgttagattaaatatgtctacaagatttcattacttattaccacactggatctttgctccatgtcctctcttct 356  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  39946640 ctcaccagtgaaccacttaatttcaccgttagattaaatacgtctacaagatttcattacttattaccacactggatctttgctccatgtcatgtcttct 39946541  T
Q  357 ct 358  Q
    ||    
T  39946540 ct 39946539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 29595642 - 29595541
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaatatgtctacaagatttcattacttattac 323  Q
    |||||||||||| ||||||| ||||||||||| |||||||||| |||| ||||||  ||| |||||||||||| | ||| ||||| |||||| |||| ||    
T  29595642 ggtggattctagcgtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaataagactataagatctcattatttataac 29595543  T
Q  324 ca 325  Q
    ||    
T  29595542 ca 29595541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 16195182 - 16195107
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaa 294  Q
    |||| ||||||||||||||||||||||||||||||||  ||||  ||| ||||| |||||||||||| ||||||||    
T  16195182 aaaaaggtggattctagggtgagggatcaattaagtccatcactggtgtaccacattattccaccgtcagattaaa 16195107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 35524926 - 35524878
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  35524926 tggtggattctagggtgagggatcaattaagtttctcaccggtggacca 35524878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 2029102 - 2029051
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||| |||||    
T  2029102 aaaaaaaggtggattctagggtgagggctcaattaagtccctcaccggtgaa 2029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 39945855 - 39945914
Alignment:
Q  235 gggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaa 294  Q
    |||||||||| |||||||||| |||| | ||| |||||||||||||||||| ||||||||    
T  39945855 gggtgagggaccaattaagtccctcatcggtgtaccactttattccaccgtcagattaaa 39945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 23253535 - 23253486
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||||||    
T  23253535 tggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 4095107 - 4095158
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  4095107 aaaagggtggattctagggtgagg-atcaattaagtctctcaccggtggacca 4095158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 27345968 - 27345929
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  27345968 tggtggattctagggtgagggttcaattaagtccctcacc 27345929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 39937961 - 39937906
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||| |||||||||||||||||||||| ||| ||||||| |||||| ||| |||||    
T  39937961 aaaatatggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 20476164 - 20476126
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  20476164 ggtggattttagggtgagggatcaattaagtccctcacc 20476126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 40372215 - 40372178
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagt 254  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  40372215 aaaaattggtggattctagggtgagggttcaattaagt 40372178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 23258013 - 23257969
Alignment:
Q  226 tggattctagggtgagggatcaattaagtctctcaccagtgaacc 270  Q
    |||||| |||||||||||||||||||| ||||||||  |||||||    
T  23258013 tggattttagggtgagggatcaattaaatctctcactggtgaacc 23257969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 33086729 - 33086773
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    ||||||||||||| ||||||||||||||||||  ||||| |||||    
T  33086729 ggtggattctaggatgagggatcaattaagtccttcaccggtgaa 33086773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 54308454 - 54308525
Alignment:
Q  225 gtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaata 296  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||||||  ||  ||||||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaata 54308525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 3583998 - 3584055
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactt 274  Q
    |||||||||||||||||||||||||||| ||||||| || |||||| ||| |||||||    
T  3583998 aaaaaatggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 3584055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 47571191 - 47571240
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  47571191 aaaagggtggattctagggtgagggatcaattaagtccctcaccggtgaa 47571240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 49349676 - 49349720
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaa 49349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 20807935 - 20807984
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||    
T  20807935 atggtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 2226759 - 2226711
Alignment:
Q  213 atttaaaaaatggtggattctagggtgagggatcaattaagtctctcac 261  Q
    |||||||||||| |||||||||||||||||| |||||||| || |||||    
T  2226759 atttaaaaaatgatggattctagggtgagggttcaattaattccctcac 2226711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 47571987 - 47571943
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 53344789 - 53344745
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||    
T  53344789 ggtggattctagggtgagggatcaatcaagtccctcaccggtgaa 53344745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 18745421 - 18745346
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaata 296  Q
    ||||||| ||||||||||||||| ||||| ||||| |||||| ||| ||||||  |||  ||| ||||||||||||    
T  18745421 aatggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaata 18745346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 49350318 - 49350271
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 47808362 - 47808400
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  47808362 ggtggattctagggtgagggatcaatcaagtccctcacc 47808400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 53502 - 53555
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaaccacttta 276  Q
    |||||||||||| |||||| | ||||| ||||| |||||||||| |||||||||    
T  53502 tggtggattctatggtgagagttcaatcaagtccctcaccagtggaccacttta 53555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 15287567 - 15287616
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    ||||||||||||||||||||  |||||||||| |||||| ||| ||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccact 15287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 4707005 - 4706957
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||| || |||||||| |||||| ||| ||||    
T  4707005 tggtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 43479555 - 43479523
Alignment:
Q  228 gattctagggtgagggatcaattaagtctctca 260  Q
    |||||||||||||||| ||||||||||||||||    
T  43479555 gattctagggtgagggttcaattaagtctctca 43479523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 24666126 - 24666176
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  24666126 aatggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 51386454 - 51386504
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  51386454 atggtggattttagggtgagggttcaattaagtccctcaccagtgaaccac 51386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 56226460 - 56226534
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaata 296  Q
    ||||||||||||| | |||||||||||||||||||||||||  || |||||||||||  ||| ||||||| ||||    
T  56226460 atggtggattctaagatgagggatcaattaagtctctcaccgatgtaccactttatttaaccattagatttaata 56226534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 51387181 - 51387124
Alignment:
Q  216 taaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||| ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||    
T  51387181 taaataatggtggattatagggtgagggatcaattacgtccctcaccggtgaaccact 51387124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 18362935 - 18362982
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  18362935 ggtggattctagggtgagggatcaattaagtctttcatcggtgaacca 18362982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 34450815 - 34450882
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagatt 291  Q
    |||| ||||||||||||||||||||||||||| |||||| ||| | |||||||  ||||| |||||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcactttaagccaccattagatt 34450882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 34451492 - 34451441
Alignment:
Q  217 aaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||| |||||||||||||||||||||||||||||||||  |||||| |||||    
T  34451492 aaaagatggtggattctagggtgagggatcaattaagtacctcaccggtgaa 34451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 36599991 - 36599944
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  36599991 ggtggattctagggtgagggatcaattaagtctttcatcggtgaacca 36599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 45393979 - 45394030
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||||| ||||||| ||||||| |||||||||||||| ||| ||||||||||    
T  45393979 atggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccact 45394030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 25725856 - 25725786
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaa 294  Q
    |||||| |||||||||||||| |||||||||| |||||| ||| |||| |  ||| | |||||||||||||    
T  25725856 ggtggagtctagggtgagggagcaattaagtccctcaccggtggaccattcaatttcgccgttagattaaa 25725786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 34941502 - 34941544
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtg 266  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctcactagtg 34941544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 13924792 - 13924841
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||||||||||||||||| |||||||| || |||||| ||| |||||    
T  13924792 tggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 6057053 - 6056997
Alignment:
Q  218 aaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactt 274  Q
    |||| ||||||||||||||||||||| || | |||||| |||||| ||| |||||||    
T  6057053 aaaattggtggattctagggtgagggttctactaagtccctcaccggtggaccactt 6056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 18363705 - 18363653
Alignment:
Q  220 aaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||| |||||||||||||||| ||||||||||  |||||| ||| |||||    
T  18363705 aaatggtcgattctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 20143280 - 20143328
Alignment:
Q  225 gtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    ||||||||||||||||||| |||| |||||| |||||| ||| ||||||    
T  20143280 gtggattctagggtgagggctcaactaagtccctcaccggtgtaccact 20143328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 21527079 - 21527035
Alignment:
Q  218 aaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||| |||||||||||||||||||| || |||||||| ||||||    
T  21527079 aaaaacggtggattctagggtgagggctctattaagtccctcacc 21527035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 35605991 - 35606027
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctca 260  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  35605991 ggtggattctagggtgagggagcaattaagtccctca 35606027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 36599223 - 36599275
Alignment:
Q  220 aaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||| |||||||||||||||| ||||||||||  |||||| ||| |||||    
T  36599223 aaatggtcgattctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 38519233 - 38519185
Alignment:
Q  226 tggattctagggtgagggatcaattaagtctctcaccagtgaaccactt 274  Q
    ||||||||||||||| ||| |||||||||| |||||| ||| |||||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtaccactt 38519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 47157437 - 47157389
Alignment:
Q  214 tttaaaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||||    
T  47157437 tttaaaaaacggtgaattctagggtgagggttcaattaaatccctcacc 47157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 56227103 - 56227031
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaata 296  Q
    |||||||||||| ||||||| ||||| |||||  ||||| ||| |||||||||||  |||||| |||| ||||    
T  56227103 ggtggattctagagtgagggctcaatgaagtccttcaccggtgtaccactttatttaaccgttggatttaata 56227031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 42094000 - 42094053
Alignment:
Q  215 ttaaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  42094000 ttaaaaaaaggtggattctagggtgagggatcaattaagtccctcaccggtgaa 42094053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 4402335 - 4402284
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccacttt 275  Q
    |||||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 4402284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 22632323 - 22632369
Alignment:
Q  225 gtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 27243428 - 27243494
Alignment:
Q  206 attttttatttaaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||| ||| |||||||||||||||| || || ||||||||||||||||| |||||| ||| |||||    
T  27243428 attttatatgtaaaaaatggtggattataaggcgagggatcaattaagtccctcaccggtggaccac 27243494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 27255003 - 27255069
Alignment:
Q  206 attttttatttaaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||| ||| |||||||||||||||| || || ||||||||||||||||| |||||| ||| |||||    
T  27255003 attttatatgtaaaaaatggtggattataaggcgagggatcaattaagtccctcaccggtggaccac 27255069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 9277832 - 9277791
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcacca 263  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  9277832 atggtggattctagggtgagggagcaattaagtccctcacca 9277791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    ||||||||||||| |||||||||||||||||  |||||| ||||||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 16911103 - 16911047
Alignment:
Q  215 ttaaaaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||| ||| |||||||||||||||||||| ||||||||||| |||||| ||| ||||    
T  16911103 ttaacaaacggtggattctagggtgagggctcaattaagtccctcaccggtgtacca 16911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 26847097 - 26847145
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||||||||||||||||  |||||||||| |||||| |||||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 42663267 - 42663315
Alignment:
Q  214 tttaaaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  42663267 tttaaaaattggtggattctagggtgagagtccaattaagtctctcacc 42663315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 31713916 - 31713846
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaa 294  Q
    |||||||||||||||||||| || |  ||||| |||||| ||| ||||||  ||| |||||||||||||||    
T  31713916 ggtggattctagggtgagggttctaacaagtccctcacccgtggaccactcaatttcaccgttagattaaa 31713846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 42094792 - 42094754
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  42094792 ggtgaattctagggtgagggatcaattaagtccctcacc 42094754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 35399996 - 35399944
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||| |||||||||||| || || |||||| ||| ||||    
T  35399996 aaaatggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 35399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 30581314 - 30581265
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccact 30581265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 17114137 - 17114181
Alignment:
Q  216 taaaaaatggtggattctagggtgagggatcaattaagtctctca 260  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  17114137 taaaaaatggtggattctagggtgagggttcaattaagtccctca 17114181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 3314955 - 3315026
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactttattccaccgttagattaaat 295  Q
    ||||||||||| |||||||| ||||||||||| |||||| ||| |||||||||||  ||| || ||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatttaaccattggattaaat 3315026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 41359019 - 41358972
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  41359019 ggtggattctagggtgagggatcaattaagtccatcaccagtggacca 41358972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 36611545 - 36611495
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||| ||||    
T  36611545 aatggtggattctagggtgagggttcaattaaatctctcaccggtggacca 36611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 36611556 - 36611600
Alignment:
Q  229 attctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 41618029 - 41617981
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||||||||||| |||||||  ||||||||||||||||||||| |||||    
T  41618029 ggtggattctagagtgagggtccaattaagtctctcaccagtggaccac 41617981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 44876980 - 44876944
Alignment:
Q  226 tggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||||||||||||||||||||||||| ||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcacc 44876944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 28007157 - 28007204
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    ||||||||||||||||||||| |||||||||| |||||| ||| ||||    
T  28007157 ggtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 41358306 - 41358349
Alignment:
Q  219 aaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  41358306 aaaatggtggattcttggatgagggatcaattaagtccctcacc 41358349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 30580635 - 30580673
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30580635 ggtggattctagggtgagggtttaattaagtctctcacc 30580673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 35892351 - 35892301
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactt 274  Q
    ||||||||||||||||||||| ||||||| || |||||| ||| |||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactt 35892301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 41617174 - 41617239
Alignment:
Q  208 tttttatttaaaaaat--ggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||| |||||||||||  |||||||||||| ||||| ||||||||||||| |||||| ||| ||||    
T  41617174 ttttaatttaaaaaatccggtggattctagagtgagtgatcaattaagtccctcaccggtggacca 41617239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 40426853 - 40426882
Alignment:
Q  226 tggattctagggtgagggatcaattaagtc 255  Q
    ||||||||||||||||||||||||||||||    
T  40426853 tggattctagggtgagggatcaattaagtc 40426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 46676305 - 46676268
Alignment:
Q  225 gtggattctagggtgagggatcaattaagtctctcacc 262  Q
    |||||||||||||| || ||||||||||||||||||||    
T  46676305 gtggattctagggtaagtgatcaattaagtctctcacc 46676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 3315517 - 3315473
Alignment:
Q  218 aaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||||    
T  3315517 aaaaacggtggattctaaggtgagggctcaattaagtccctcacc 3315473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 36611777 - 36611737
Alignment:
Q  233 tagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  36611777 tagggtgagggttcaattaagtccctcatcagtgaaccact 36611737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 41965825 - 41965777
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||||||||||||||||  |||||||||| |||||| ||| |||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 46491746 - 46491698
Alignment:
Q  214 tttaaaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||||||  |||||||||||||||||||| |||| |||||| ||||||    
T  46491746 tttaaaaacaggtggattctagggtgagggttcaactaagtccctcacc 46491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 44987587 - 44987550
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcac 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44987587 ggtggattctagggtgagggatcaattaagtctctcac 44987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||| ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 127030 - 127081
Alignment:
Q  221 aatggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    ||||||||||||||||||||||| |||| |||||| |||| ||||| |||||    
T  127030 aatggtggattctagggtgagggttcaactaagtccctcatcagtggaccac 127081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 7755015 - 7754984
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtc 255  Q
    ||||||||||||||||||||||||||||||||    
T  7755015 ggtggattctagggtgagggatcaattaagtc 7754984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 10365555 - 10365525
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagt 254  Q
    |||||||||||||||||||||||||||||||    
T  10365555 ggtggattctagggtgagggatcaattaagt 10365525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 127783 - 127739
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaa 268  Q
    |||||||||||||||||||| |||||||||||  ||||| |||||    
T  127783 ggtggattctagggtgagggttcaattaagtccttcaccggtgaa 127739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 1141298 - 1141350
Alignment:
Q  222 atggtggattctagggtgagggatcaattaagtctctcaccagtgaaccactt 274  Q
    ||||||||||||| ||||||||| |||| ||||| |||||| ||| |||||||    
T  1141298 atggtggattctaaggtgagggagcaatgaagtccctcaccggtggaccactt 1141350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 10173936 - 10173984
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccac 272  Q
    |||||||||||||||||||| ||  ||||||| |||||| |||||||||    
T  10173936 ggtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 44986812 - 44986848
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctca 260  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctca 44986848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 16719043 - 16718995
Alignment:
Q  223 tggtggattctagggtgagggatcaattaagtctctcaccagtgaacca 271  Q
    |||||||||||||||||| |||||||||||||| |||||| ||| ||||    
T  16719043 tggtggattctagggtgacggatcaattaagtccctcaccggtggacca 16718995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 13084927 - 13084878
Alignment:
Q  224 ggtggattctagggtgagggatcaattaagtctctcaccagtgaaccact 273  Q
    |||| ||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  13084927 ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccact 13084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 34423625 - 34423581
Alignment:
Q  218 aaaaatggtggattctagggtgagggatcaattaagtctctcacc 262  Q
    ||||| ||||||||||||||||||| | |||||||||| ||||||    
T  34423625 aaaaaaggtggattctagggtgaggaagcaattaagtccctcacc 34423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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