View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_3 (Length: 608)
Name: NF0795_low_3
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 148 - 603
Target Start/End: Original strand, 40796629 - 40797084
Alignment:
| Q |
148 |
caaattgcaccgagttccgtgtctgcttacatgagggagagtgctatagcctataagcatgtatgtatcctctctaagcctaccagtctttgttgttttg |
247 |
Q |
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| T |
40796629 |
caaattgcaccgagttctgtgtctgcttacatgagggagagtgctatagcctataagcatgtatgtatcctctctaagcctaccagtctttgttgttttg |
40796728 |
T |
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| Q |
248 |
tattctggtgtcatgtgctttcattcttttagggcgttgttttcttttgtgatagcaataggaccacgacaggaactataatgttgataatcttttagtt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40796729 |
tattctggtgtcatgtgctttcattcttttagggcgttgttttcttttgtgatagcaataggaccacgacaggaactataatgttgataatcttttaatt |
40796828 |
T |
|
| Q |
348 |
atattgagtttaatctataggtttcaaggttgggcaaattgcttgaagttctaaaatgctggctacttttcgatggaattgaagattaaaccactgtagt |
447 |
Q |
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| T |
40796829 |
atattgagtttaatctataggtttcaaggttgggcaaattgcttgaagttctaaaatgctggctacttttcgatggaattgaagattaaaccactgtggt |
40796928 |
T |
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| Q |
448 |
tttactttgtactgtgttgaataagaattgggctattgttgattcactctaagtctaaaccatagagtggacaatgtgatattcaaagagggttgtaaac |
547 |
Q |
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| T |
40796929 |
tttactttgtactgtgttgaataagaattgggctattgttgattcactctaagtctaaaccatagagtggacaatgtgatattcaaagagggttgtatac |
40797028 |
T |
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| Q |
548 |
cttggcgcatagatatgtttttaattgtcattagaagcacaagggcctttgtttct |
603 |
Q |
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| T |
40797029 |
cttgccgcatagatatgtttttaattgtcattagaagcacaagggcctttgtttct |
40797084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 40796552 - 40796587
Alignment:
| Q |
116 |
gggtttattctctttacaaagctccaatttgtcaaa |
151 |
Q |
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| T |
40796552 |
gggtttattctctttacaaagctccaatttgtcaaa |
40796587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 236 - 387
Target Start/End: Original strand, 18307559 - 18307703
Alignment:
| Q |
236 |
tttgttgttttgtattctggtgtcatgtgctttcattcttttagggcgttgttttctttt--gtgatagcaataggaccacgacaggaactataatgttg |
333 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| | |||||||| |
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| T |
18307559 |
tttgttgttttgtatttcggtgtcatgtgctttcattactttagggcattgttttcttttcattgatagcaataggaccctgccaggaact--------- |
18307649 |
T |
|
| Q |
334 |
ataatcttttagttatattgagtttaatctataggtttcaaggttgggcaaatt |
387 |
Q |
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| T |
18307650 |
atcatcttttaattatattgagcttaatctatatgtttaaacgttgggcaaatt |
18307703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 783351 - 783274
Alignment:
| Q |
236 |
tttgttgttttgtattctggt-gtcatgtgctttcattcttttagggcgttgttttcttttgtgatagcaataggacc |
312 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
783351 |
tttgttgttttgtattttcgttgtcatgtgctttcattcttttccggcgttgttttcctttgtgatagcaataggacc |
783274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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