View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_38 (Length: 354)

Name: NF0795_low_38
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_38
NF0795_low_38
[»] chr4 (3 HSPs)
chr4 (81-348)||(105999-106266)
chr4 (263-348)||(166715-166800)
chr4 (92-136)||(166547-166591)
[»] chr7 (2 HSPs)
chr7 (81-160)||(13054476-13054555)
chr7 (223-313)||(13054763-13054856)
[»] chr3 (1 HSPs)
chr3 (214-313)||(12135541-12135640)
[»] scaffold0013 (2 HSPs)
scaffold0013 (217-313)||(90399-90498)
scaffold0013 (95-144)||(90709-90758)
[»] chr8 (7 HSPs)
chr8 (228-313)||(5652560-5652645)
chr8 (223-313)||(5687139-5687229)
chr8 (220-313)||(5666132-5666226)
chr8 (86-136)||(5666314-5666364)
chr8 (86-136)||(5687384-5687434)
chr8 (223-313)||(5719256-5719346)
chr8 (86-136)||(5719500-5719550)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 81 - 348
Target Start/End: Original strand, 105999 - 106266
Alignment:
Q  81 cacagagagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaattagttaccaatcattcgctg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105999 cacagagagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaattagttaccaatcattcgctg 106098  T
Q  181 acttcaaaatgaattgacaataataatgtcttgctaaataataatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgca 280  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  106099 acttcaacatgaattgacaataataatgtcttgctaaataataataatgcagatatatgtacctctcgaaggaagccgatccaatgttgtacatactgca 106198  T
Q  281 tgggctcttatgggtttaattcatgccggccagacagagagagaccctactcctctccatcgtgctgc 348  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  106199 tgggctcttatgggtttaattcatgccggccaggcagagagagaccctactcctctccatcgtgctgc 106266  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 166715 - 166800
Alignment:
Q  263 aatgttgtacatactgcatgggctcttatgggtttaattcatgccggccagacagagagagaccctactcctctccatcgtgctgc 348  Q
    ||||||||||| ||||||||||||||||||| |||||||||||  || ||| |||||||||||||||||||||| |||||||||||    
T  166715 aatgttgtacaaactgcatgggctcttatggctttaattcatggtggtcaggcagagagagaccctactcctcttcatcgtgctgc 166800  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 166547 - 166591
Alignment:
Q  92 gatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  166547 gatggtgggtggggggagagctatctttcatgcccaaaaaaggtt 166591  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 13054476 - 13054555
Alignment:
Q  81 cacagagagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattgagtatttattactaat 160  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13054476 cacaaagagaggatggtgggtggggagagagctatctttcatgcccaaaaaaggttcataattgagtaattattactaat 13054555  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 13054763 - 13054856
Alignment:
Q  223 aatattgcagatatatgtacctctcgaaggaagc-ag--atccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||| |||||| |||| ||||||| ||||||||| ||  ||| ||||||||||| |||||||||| ||| ||| |||||||| |||| ||||||    
T  13054763 aataatgcagaaatatatacctcttgaaggaagccagcaatcaaatgttgtacaaactgcatggggtctcatgagtttaatttatgctggccag 13054856  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 12135640 - 12135541
Alignment:
Q  214 ctaaataataatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    ||||||| ||||| ||||||||||  ||||||| |||||||| ||||| ||| ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  12135640 ctaaatattaataatgcagatatacatacctcttgaaggaagtagatcaaatcttgtacagactgcatgggctcttctgggtttaattcatgctggccag 12135541  T

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Target: scaffold0013 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 90498 - 90399
Alignment:
Q  217 aataataatattgcagatatatgtacctctcgaaggaagca--ga-tccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||||||||| ||||| ||||||||||||| |||||||||   || || ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  90498 aataataataatgcaggtatatgtacctcttgaaggaagccaggagtcaaatgttgtacaaactgcatgggctcttatgggtttaattcatgctggccag 90399  T

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Target: scaffold0013; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 90758 - 90709
Alignment:
Q  95 ggtgggtggggggagagctatctttcaagcccaaaaaaggttcataattg 144  Q
    ||||| ||||| ||||||||||||||| |||| |||||||||||||||||    
T  90758 ggtggttggggagagagctatctttcatgccctaaaaaggttcataattg 90709  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 5652645 - 5652560
Alignment:
Q  228 tgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||||| ||||||||||||||||||| |  |||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||    
T  5652645 tgcagacatatgtacctctcgaaggaggtcgatcaaatattgttcaaactgcatgggctcttatgggtttaattcatgctggccag 5652560  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 5687229 - 5687139
Alignment:
Q  223 aatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||| ||||||||||||||||||| |||||||||  ||| ||| ||||||| || ||||||||||| |||| ||| |||||||||||||||    
T  5687229 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacagcatgggctctaatggctttgattcatgccggccag 5687139  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 5666226 - 5666132
Alignment:
Q  220 aataatat-tgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||||||| |||||||||||| |||||| |||||||||  ||| ||| ||||||| ||  |||||||||| |||| ||| |||||||||||||||    
T  5666226 aataatatatgcagatatatgcacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatggctttgattcatgccggccag 5666132  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 5666364 - 5666314
Alignment:
Q  86 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 136  Q
    |||||||||||||| ||||| |||||| ||||||||||| |||||||||||    
T  5666364 agagaggatggtggatggggagagagccatctttcaagctcaaaaaaggtt 5666314  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 5687434 - 5687384
Alignment:
Q  86 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 136  Q
    |||||||||||||||||||| |||||| |||||||| || |||||||||||    
T  5687434 agagaggatggtgggtggggagagagccatctttcatgctcaaaaaaggtt 5687384  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 5719346 - 5719256
Alignment:
Q  223 aatattgcagatatatgtacctctcgaaggaagcagatccaatgttgtacatactgcatgggctcttatgggtttaattcatgccggccag 313  Q
    |||| ||||||||||||||||||| |||||||||  ||| ||| ||||||| ||  |||||||||| || | ||| |||||||| ||||||    
T  5719346 aataatgcagatatatgtacctcttgaaggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccag 5719256  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 5719550 - 5719500
Alignment:
Q  86 agagaggatggtgggtggggggagagctatctttcaagcccaaaaaaggtt 136  Q
    |||||||||||||||||||| |||||| |||||||| || |||||||||||    
T  5719550 agagaggatggtgggtggggagagagccatctttcatgctcaaaaaaggtt 5719500  T

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