View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_4 (Length: 578)
Name: NF0795_low_4
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 30 - 567
Target Start/End: Original strand, 4600419 - 4600957
Alignment:
| Q |
30 |
ttcccgagaattcaagttcttcacgtccaaacaagaaaacaagcaaaaacagaaaatattatcgtggcgcgattttgaccataaagaaacttggaaattt |
129 |
Q |
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| T |
4600419 |
ttcccgagaattcaagttcttcacgtccaaacaagaaaacaagcaaaaacagaaaatattattgtggcacgattttgacaataaagaaacttggaaattt |
4600518 |
T |
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| Q |
130 |
tgtatcataccaaaaaatctcaaaactatatcttacaagaatact-gcacagcattccaaccgttcattagaagatattatcaaaagaatatatgattgt |
228 |
Q |
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| T |
4600519 |
tgtatcataccaaaaaatctcaaaactatatcttacaagaatacttgcacagcattccaaccgttcattagaagatattatcaaaaatatatatgattgt |
4600618 |
T |
|
| Q |
229 |
ggatcaccctcataaatttcagtttactacttgaactgcaattataatatatttcttacatcaaagattctagttgtacagaagaaaacatgtgcaaatt |
328 |
Q |
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| T |
4600619 |
ggatcatcttcataaatttcagtttactacttgaactgcaattataatatatttcttacatcaaagattctagttgtacagaagaaaacatgtgcaaatt |
4600718 |
T |
|
| Q |
329 |
gatgaagcaacaatgaccactcattctatttatcatagtattgtctattatttacccatctctgaatctggcaaattttggacttatgataaagaacaga |
428 |
Q |
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| T |
4600719 |
gatgaagcaacaatgaccactcattctttttatcatagtattgtctattatttacccatctctgaatctggcaaattttggacttatgataaagaacaga |
4600818 |
T |
|
| Q |
429 |
aaaatttgtctttcaacaaggactagagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaagagggatggatgtgtccctcttatc |
528 |
Q |
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| T |
4600819 |
aaaatttgtctttcaacaaggactggagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaagagggatggatgtgtccctattatc |
4600918 |
T |
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| Q |
529 |
aagatagccctccattctcttcacttgtatatgctttca |
567 |
Q |
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| T |
4600919 |
aagatagccttccattctcttcacttgtatatgctttca |
4600957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 101 - 410
Target Start/End: Original strand, 4615125 - 4615440
Alignment:
| Q |
101 |
attttgaccataaagaaacttggaaattttgtatcataccaaaaaatctcaaaactatatcttacaagaatac-tgcacagcattccaaccgttcattag |
199 |
Q |
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|||||||| |||| |||||||||||||||| ||||||||| |||||||||| |||||||| | || |||| |||| ||||||||||| |||| | | |
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| T |
4615125 |
attttgacactaaaaaaacttggaaattttgagtcataccaagaaatctcaaa-ctatatctaaaaa--atacatgcatggcattccaaccattcagtgg |
4615221 |
T |
|
| Q |
200 |
aagatattatcaaaagaatatatgattgtggat---caccctcataaatttcagtttactacttgaactgcaattataatatat--ttcttacatcaaag |
294 |
Q |
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| T |
4615222 |
aagatatcatcaaac-agtatatgattgtggatattcaccctcataattttcaatttt-tacttgaattgcaagtataatatatatttctcatatcaaag |
4615319 |
T |
|
| Q |
295 |
attctagttgtacagaagaaaacatgtgcaaattgatgaagcaacaatgaccactcattctatttatcata------gtattgtctattatttacccatc |
388 |
Q |
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| T |
4615320 |
attctggttttacagaggaaaacattttcaaattgattaagcaacaaagaccactcattat-tttgtcatatatagtctattggttattatttacccatg |
4615418 |
T |
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| Q |
389 |
tctgaatctggcaaattttgga |
410 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
4615419 |
tctgaatccggcaaattttgga |
4615440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 4615499 - 4615572
Alignment:
| Q |
433 |
tttgtctttcaacaaggactagagattctccctaaagtcacaattgtataaaatccaaatttaccaatcaagag |
506 |
Q |
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||||||||||||||||||||| |||||||| | |||||||||||| |||||| |||||||| ||||||||||| |
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| T |
4615499 |
tttgtctttcaacaaggactatagattctctccaaagtcacaattacataaaagccaaattttccaatcaagag |
4615572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 1280454 - 1280494
Alignment:
| Q |
516 |
tgtccctcttatcaagatagccctccattctcttcacttgt |
556 |
Q |
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| T |
1280454 |
tgtccctatcatcaagatagccctccattctcttcacttgt |
1280494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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