View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_42 (Length: 330)
Name: NF0795_low_42
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 8883615 - 8883481
Alignment:
| Q |
111 |
catgtagttaaattaaccacaaatttgattatgaattgaattaatcctttattgatctaaattaaccatatttttgcacatgatcaa-ccaattgtcaca |
209 |
Q |
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| T |
8883615 |
catgtagttaaattaaccacaaatttgattatgaattgaattaatcctttattgatctgaattaaccatatttttgcacatgatcaacccaattgtcaca |
8883516 |
T |
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| Q |
210 |
catnnnnnnnnngggtgttacatgtatgtattata |
244 |
Q |
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| T |
8883515 |
cataaaaaaaaagggtgttacatgtatgtattata |
8883481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 8883199 - 8883138
Alignment:
| Q |
243 |
tattatgtaagaagaaatatttgtatgtatttcagctagctggggttgtggctgtagaggtc |
304 |
Q |
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| T |
8883199 |
tattatgtaagaagaaatatttgtatgtatttcagctagctggggttgtggctgtagaggtc |
8883138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 8883688 - 8883637
Alignment:
| Q |
30 |
agtttttcatacacttgaacgtctaaagaatcacatgcaaaaatatgattag |
81 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
8883688 |
agtttttcatacacttgaacgtctatagaatcacatgcgaaaatatgattag |
8883637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 40242935 - 40242860
Alignment:
| Q |
110 |
tcatgtagttaaattaaccacaaatttgattatgaattgaattaatcctttattgatctaaattaaccatattttt |
185 |
Q |
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| T |
40242935 |
tcatgtagttgaattaaccacaattttgattgtgaattgaattaaccatttactaaactaaattaatcatattttt |
40242860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 11667842 - 11667769
Alignment:
| Q |
113 |
tgtagttaaattaaccacaaatttgattatgaattgaattaatcctttattgatctaaattaaccatatttttg |
186 |
Q |
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||||||| |||||||||||| | |||| |||||||||||||||| |||| | | ||||||||||||||||| |
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| T |
11667842 |
tgtagttgaattaaccacaattctgatcatgaattgaattaatcaattatacaaccgaattaaccatatttttg |
11667769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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