View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_45 (Length: 327)
Name: NF0795_low_45
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 15854764 - 15854469
Alignment:
| Q |
1 |
atattgcttagtgttctgctttacttatctggattctgggcttcatgctctatggtgattaactaaattaaaaattaatatttcatgattaataatgaaa |
100 |
Q |
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| T |
15854764 |
atattgcttagtgttctgctttacttatctggattctggccttcatgctctatggtgattaactaaattaaaaattaatatttcatgattaata------ |
15854671 |
T |
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| Q |
101 |
tagggaatactcggttgtgatgatggagttgatgatttgaactttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttca |
200 |
Q |
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| T |
15854670 |
----------------gtgatgacggagttgatgatttgaactttgtttcaggggggaggatgattatatgcctggaaacattatagagatagaacttca |
15854587 |
T |
|
| Q |
201 |
taatttcatgacatttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgca |
300 |
Q |
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| T |
15854586 |
taatttcatgacatttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgca |
15854487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 10690663 - 10690864
Alignment:
| Q |
113 |
ggttgtgatgatggagttgatgatttgaactttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttcataatttcatgac |
212 |
Q |
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| T |
10690663 |
ggttgtgactatggagttgatgagttgagttttgtttcaggggggaggatgattatatgcctggaaacattttagagatcgaacttcataatttcatgac |
10690762 |
T |
|
| Q |
213 |
atttgattacctaaaatgtaaacctggacctcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggc |
312 |
Q |
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| T |
10690763 |
atttgattacttaaaatgtaaacccgggcctcggttgaatctcgtaattgggccaaatggttctggaaagagttctcttgtatgtgctattgctcttggc |
10690862 |
T |
|
| Q |
313 |
ct |
314 |
Q |
| |
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|| |
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| T |
10690863 |
ct |
10690864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 47430585 - 47430756
Alignment:
| Q |
143 |
tttgtttcaggggggaggatgattatatgccaggaaacattatagagatagaacttcataatttcatgacatttgattacctaaaatgtaaacctggacc |
242 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||| || || ||||||||||||||||||||||||||| ||||||||||||| || || |
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| T |
47430585 |
tttgtttcaggggggaggatgattatatgcctggaaacattttagaaatcgagcttcataatttcatgacatttgattacttaaaatgtaaacccgggcc |
47430684 |
T |
|
| Q |
243 |
tcggttgaatcttgtaattggtcccaatggttctggaaagagttctcttgtatgtgcaattgctcttggcct |
314 |
Q |
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| T |
47430685 |
tcgcttgaatcttgtaattggtccaaatggttctggaaagagttctcttgtatgtgctattgctcttggcct |
47430756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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