View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_46 (Length: 321)
Name: NF0795_low_46
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_46 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 80 - 321
Target Start/End: Original strand, 27838397 - 27838638
Alignment:
| Q |
80 |
agcacagaacgcacttttacaatctcatcccaatttgattcctataaatacccatctcaaggatatgacatttcaacattttccataatgacaatttcga |
179 |
Q |
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| T |
27838397 |
agcacaaaacgcacttttacaatctcatcccaatttgattcctataaatacccatctcaaggatatgacatttcaacattttccataatgacaatttcga |
27838496 |
T |
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| Q |
180 |
aagttcttagtannnnnnnctttgtgttgttaggtttaggtatttgctctgccgctagaacactcctcacctttggtgtagatcatggcattggtgcagg |
279 |
Q |
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| T |
27838497 |
aagttcttggtatttttttctttgtgttgttaggtttcggtatttgctctgccgctagaacactcctcacctttggtgtagatcatggcattggtgcagg |
27838596 |
T |
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| Q |
280 |
tttccatggtgacattggtgtgagtggaggtggaggttatgg |
321 |
Q |
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| T |
27838597 |
tttccatggtgacattggtgtgagtggaggtggaggttatgg |
27838638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 27832903 - 27833058
Alignment:
| Q |
166 |
aatgacaatttcgaaagttcttagtannnnnnnctttgtgttgttaggtttaggtatttgctctgccgctagaacactcctcacctttggtgtagatcat |
265 |
Q |
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| T |
27832903 |
aatggcaacttcgaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctctgctgctagaacactcctcacctttggtgtagatcat |
27833002 |
T |
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| Q |
266 |
ggcattggtgcaggtttccatggtgacattggtgtgagtggaggtggaggttatgg |
321 |
Q |
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| T |
27833003 |
cgcattggtgcaggttaccatggtgacattggtgtgagtggtggtggaggtcatgg |
27833058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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