View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_49 (Length: 318)
Name: NF0795_low_49
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 29206960 - 29207112
Alignment:
| Q |
96 |
aacttcatcatcattgccttcttgttcatcatcaactccattatcactatctctttctcacttagtattatcaatgtatcttttctttgtgatgtaggaa |
195 |
Q |
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| T |
29206960 |
aacttcatcaccattgccttcttgttcatcatcaaatccattatcactatctctttctcacttagtattatcaatgtatcttttctttgtgatgtaggaa |
29207059 |
T |
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| Q |
196 |
acatgcaactacattgggtcaatttatagagtgcaaccaggggtatatatgtc |
248 |
Q |
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| T |
29207060 |
acatgcaactacattgggtcaatttatagagtgcaaccaggggtatatatgtc |
29207112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 29158354 - 29158416
Alignment:
| Q |
96 |
aacttcatcatcattgccttcttgttcatcatcaactccattatcactatctctttctcactt |
158 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
29158354 |
aacttcatcatcattgccttcttgttcatcatcaacaccattatcactatctttttctcactt |
29158416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 29153727 - 29153785
Alignment:
| Q |
96 |
aacttcatcatcattgccttcttgttc---atcatcaactccattatcactatctcttt |
151 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
29153727 |
aacttcatcaccattgccttcttgttcttgttcatcaactccattgttactatctcttt |
29153785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 29207147 - 29207175
Alignment:
| Q |
283 |
gaaaagatgcattcatcacatgccttaca |
311 |
Q |
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| T |
29207147 |
gaaaagatgcattcatcacatgccttaca |
29207175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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