View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_5 (Length: 571)
Name: NF0795_low_5
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 34 - 404
Target Start/End: Original strand, 39620172 - 39620542
Alignment:
| Q |
34 |
atgttgggcatatatggacttggaggaatagggaagacagaacttgccacatcattgtataacaagatcgtgcaccattatgaagctgcaagttttcttg |
133 |
Q |
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| T |
39620172 |
atgttgggtatacatggacttggtggaatagggaaaacagaacttgccaaatcattgtataacaaaattgtgcaccaatttgaagctgcaagttttcttg |
39620271 |
T |
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| Q |
134 |
ccaatgttagagacaaatcgaacaaaatcaatggcctagaagatctacagaagacacttttatcagagatgttcgagcaggcagaaacccagtttggaag |
233 |
Q |
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| T |
39620272 |
ccaacgttagagagaaatcaaacaaaatcaatggcctagaagatcttcaaaagacacttttatcagagatgtttgagaagccagataccgatctgggaag |
39620371 |
T |
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| Q |
234 |
tacaagtaaaggaatctgtgaaataaaacacaagcttggcaagaaaaaggttcttctggttcttgacgacattgataacatagaacaattnnnnnnnttg |
333 |
Q |
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| T |
39620372 |
tacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggttcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttg |
39620471 |
T |
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| Q |
334 |
gcaggaggaagtgattggtttggtccaggtagtacaatcattgtaactacaagggtcaaaggtttgctcat |
404 |
Q |
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| T |
39620472 |
gcaggaggaagtgattggtttggcccaggtagtaggatcattataactacaagggacaaaggtttgctcat |
39620542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 23 - 401
Target Start/End: Complemental strand, 39581798 - 39581421
Alignment:
| Q |
23 |
acactgtatgcatgttgggcatatatggacttggaggaatagggaagacagaacttgccacatcattgtataacaagatcgtgcaccattatgaagctgc |
122 |
Q |
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| T |
39581798 |
acactatatgtatgttgggtatatgcggactcggtggaataggaaaaacagaacttgccaaagcattgtataacaaaattgtgcaccaatttgaagctgc |
39581699 |
T |
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| Q |
123 |
aagttttcttgccaatgttagagacaaatcgaacaaaatcaatggcctagaagatctacagaagacacttttatcagagatgttcgagcaggcagaaacc |
222 |
Q |
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| T |
39581698 |
aagttttattgccaatgttagagagaaatcaaacaaaatcaacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaacc |
39581599 |
T |
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| Q |
223 |
cagtttggaagtacaagtaaaggaatctgtgaaataaaacacaagcttggcaagaaaaaggttcttctggttcttgacgacattgataacatagaacaat |
322 |
Q |
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| T |
39581598 |
gagctgggaag-ataagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaa |
39581500 |
T |
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| Q |
323 |
tnnnnnnnttggcaggaggaagtgattggtttggtccaggtagtacaatcattgtaactacaagggtcaaaggtttgct |
401 |
Q |
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| T |
39581499 |
taggaaatttggcaggaggaagtgattggtttggtccaggtagtacggtcattataactacaagggacaaaggtttgct |
39581421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 39628172 - 39628202
Alignment:
| Q |
1 |
caatttgaaacaacttgctcccacactgtat |
31 |
Q |
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| T |
39628172 |
caatttgaaacaacttgctcccacactgtat |
39628202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 444 - 566
Target Start/End: Original strand, 3589012 - 3589134
Alignment:
| Q |
444 |
tactaatacttaattttatagctgccagcaagttgaagaaaattcattgggtaaaattccaccccaacttataaaatatttttgttttcttttatcttct |
543 |
Q |
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| T |
3589012 |
tactaatacttaattttatagctgccagcaagttgaagaaaattcattgggtaaaattccaccccaacttataaaatatttttgttttcttttatcttct |
3589111 |
T |
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| Q |
544 |
gagctgtatttatattccattat |
566 |
Q |
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| T |
3589112 |
gagctgtatttacattccattat |
3589134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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