View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_54 (Length: 308)

Name: NF0795_low_54
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_54
NF0795_low_54
[»] chr6 (2 HSPs)
chr6 (1-239)||(34759917-34760155)
chr6 (1-210)||(11545565-11545778)
[»] chr1 (1 HSPs)
chr1 (1-210)||(26384306-26384515)
[»] chr3 (2 HSPs)
chr3 (4-210)||(20700491-20700697)
chr3 (1-206)||(47476391-47476596)
[»] chr8 (1 HSPs)
chr8 (62-179)||(38297046-38297163)
[»] chr5 (2 HSPs)
chr5 (1-157)||(31034963-31035119)
chr5 (4-194)||(24018214-24018404)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-200)||(59472-59669)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34760155 - 34759917
Alignment:
Q  1 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 100  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760155 ctttccaacaaccatctccaagaccacaccttaatctcttcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 34760056  T
Q  101 acaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760055 acaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt 34759956  T
Q  201 aggaggaattnnnnnnnncaacaatcaaaccacttcatc 239  Q
    ||||||||||        |||||||||||||||||||||    
T  34759955 aggaggaattaaaaaaaacaacaatcaaaccacttcatc 34759917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11545778 - 11545565
Alignment:
Q  1 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11545778 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 11545679  T
Q  101 acaaaacccaaatagtagtatgccaaaccaaccaaaagcct----ttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaata 196  Q
    |||||||||||||||||||||||||||||||||||| | ||    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11545678 acaaaacccaaatagtagtatgccaaaccaaccaaaggtctttaattagtaaccttattagctctcccaccttcactccaacaatcccaaagaacaaata 11545579  T
Q  197 aattaggaggaatt 210  Q
    ||||||||||||||    
T  11545578 aattaggaggaatt 11545565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 26384515 - 26384306
Alignment:
Q  1 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 100  Q
    |||||||||| ||||||||||||  |||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| | ||    
T  26384515 ctttccaacatccatctccaagacaacaccttaatatcttcaatcacatcctccgtcacacaattaatccccttgaaaatcaagtcatttctcttagccc 26384416  T
Q  101 acaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt 200  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||| |||||||| || || ||||||||||||||||| |||||||||||||||||    
T  26384415 acaaaacccaaatagtagtatgtcacaccaaccaaaggcctttagtaactttattagcacttccgccttcactccaacaatcccaaagaacaaataaatt 26384316  T
Q  201 aggaggaatt 210  Q
    ||||||||||    
T  26384315 aggaggaatt 26384306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 20700697 - 20700491
Alignment:
Q  4 tccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtccaca 103  Q
    ||||||| ||||||| ||||  ||||||||||||| || |||||||||||| |||||||||| | ||||||||||||||| ||||| ||||| | |||||    
T  20700697 tccaacatccatctctaagacaacaccttaatctcttctatcacatcctccgccacacaatttagccccttgaaaatcaaatcatttctcttagcccaca 20700598  T
Q  104 aaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaattagg 203  Q
    |||||||||||||||||||||| |||||||||  |||||| || ||| |||| || |||||||||||||||||||| || ||| ||||||||||||| ||    
T  20700597 aaacccaaatagtagtatgccacaccaaccaatggccttttgttaccctatttgcactcccaccttcactccaacattcccaatgaacaaataaatttgg 20700498  T
Q  204 aggaatt 210  Q
    |||||||    
T  20700497 aggaatt 20700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 47476596 - 47476391
Alignment:
Q  1 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 100  Q
    |||||||||| ||||||||||||| |||| || || || |||| ||  ||||||||| || ||||  |||||||||| |||   ||||| ||| |  |||    
T  47476596 ctttccaacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattcc 47476497  T
Q  101 acaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt 200  Q
    ||||||||||||| || || |||||||  |||||||| ||||| ||||| || ||||   | || ||  |||||||||| || ||| ||||||| |||||    
T  47476496 acaaaacccaaatcgttgtgtgccaaattaaccaaaatcctttggtaacttttttagaatttcccccaacactccaacattcccaatgaacaaagaaatt 47476397  T
Q  201 aggagg 206  Q
     |||||    
T  47476396 tggagg 47476391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 38297046 - 38297163
Alignment:
Q  62 aattaatccccttgaaaatcaagtcattcctcttggtccacaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctct 161  Q
    ||||||||||||| ||||||   ||||| |||||  ||||||  |||||||| |||||||||||||  |||||||| ||||| |||||||| |||| |||    
T  38297046 aattaatccccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaacctttggtaacctttttaggtct 38297145  T
Q  162 cccaccttcactccaaca 179  Q
    ||||||  ||||||||||    
T  38297146 cccaccaacactccaaca 38297163  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31034963 - 31035119
Alignment:
Q  1 ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc 100  Q
    |||||||||| | | ||||||||  |||||||||||||  ||| ||  ||||||||| || | || || ||||||||||||| |||||| ||| |  |||    
T  31034963 ctttccaacatctacctccaagacaacaccttaatctctacaaccaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttcc 31035062  T
Q  101 acaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattag 157  Q
    |||||||||||||||| || ||| |||  |||||||| |||||||| ||||| ||||    
T  31035063 acaaaacccaaatagttgtgtgctaaattaaccaaaaacctttagttacctttttag 31035119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 24018404 - 24018214
Alignment:
Q  4 tccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtccaca 103  Q
    ||||||| ||| ||||||||  ||||||| ||||| |||| ||  || |||||  || ||||||||||||| ||||||  | | || |||||  ||||||    
T  24018404 tccaacatccacctccaagacgacacctttatctcctcaaccaattcatccacatcaaaattaatccccttaaaaatcttgccgtttctcttcttccaca 24018305  T
Q  104 aaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaa 194  Q
      |||||||| ||||| ||||| |  |||||||| |||||  | ||||| ||||||||||| ||  | |||||||| || |||||||||||    
T  24018304 tcacccaaatggtagtgtgccatattaaccaaaaacctttgatgacctttttagctctccccccaacgctccaacattcccaaagaacaaa 24018214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 59669 - 59472
Alignment:
Q  3 ttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtccac 102  Q
    |||||||| ||| ||||||||  |||||||||| || || | ||  || ||||||  | |||| |||||||| ||||||  |||||| |||||  |||||    
T  59669 ttccaacatccacctccaagacaacaccttaatttcttcgaccaattcatccaccttaaaatttatccccttaaaaatcttgtcatttctctttttccac 59570  T
Q  103 aaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt 200  Q
    | ||||||||| || || |||  ||  |||||||  |||||||| ||||| ||| ||||||||||| |||||||||| |  ||| ||||||| |||||    
T  59569 ataacccaaatggttgtgtgctgaattaaccaaagacctttagttacctttttaactctcccacctacactccaacacttccaatgaacaaagaaatt 59472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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