View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0795_low_6 (Length: 569)
Name: NF0795_low_6
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 254 - 433
Target Start/End: Original strand, 43395930 - 43396108
Alignment:
| Q |
254 |
gtgttaataaaagaggatcggtgtccctcgtatgaattctaaccactaaactacttgatnnnnnnnngaaagaaaagaggatcggtgagaaactgctctt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
43395930 |
gtgttaataaaagaggatcggtgtccctcgtataaattctaaccactaaactacttgataaaaaaa-gaaagaaaagaggatcagtggtaaactgctctc |
43396028 |
T |
|
| Q |
354 |
aacgagtataccttaaacttagatgacttaacaaacattacattgtgtatgtgcaactcaacccatactccttcaatatt |
433 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43396029 |
aaggagtataccttaaacttagatgacttaacaaacattacattgtgtatgtgcaactcaacccatactccttcaatatt |
43396108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 43395747 - 43395862
Alignment:
| Q |
73 |
attatcacatcagaattgtaaacaggtccaatatcagtattccataaacaacataataactaattttctnnnnnnnnnngaacataattactaatagcac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43395747 |
attatcacatcagaattgtaaacaggtccaatatcagtattccataaacaacataataactaattttct-aaaaaaaaagaacataattactaatagcac |
43395845 |
T |
|
| Q |
173 |
ataagtgaatttccctc |
189 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
43395846 |
ataagtgaacttccctc |
43395862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 43395702 - 43395748
Alignment:
| Q |
58 |
tactatttatcatttattatcacatcagaattgtaaacaggtccaat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43395702 |
tactatttatcatttattatcacatcagaattgtaaacaggtccaat |
43395748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 43395384 - 43395416
Alignment:
| Q |
30 |
atttaagtactaacaaaatactaatgattacta |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43395384 |
atttaagtactaacaaaatactaatgattacta |
43395416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 43395838 - 43395882
Alignment:
| Q |
518 |
aatatcacataagtgaatttccctcaaacaaatacataagttaat |
562 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
43395838 |
aatagcacataagtgaacttccctcaaaaaaacacataagttaat |
43395882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1188 times since January 2019
Visitors: 5828