View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_65 (Length: 285)

Name: NF0795_low_65
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_65
NF0795_low_65
[»] chr2 (2 HSPs)
chr2 (3-267)||(21264394-21264658)
chr2 (3-85)||(21259995-21260077)
[»] chr1 (3 HSPs)
chr1 (3-267)||(47804966-47805230)
chr1 (3-85)||(47800566-47800648)
chr1 (72-141)||(34167698-34167767)
[»] chr3 (3 HSPs)
chr3 (3-267)||(6847537-6847801)
chr3 (3-86)||(6843115-6843198)
chr3 (72-141)||(5860714-5860783)
[»] chr7 (1 HSPs)
chr7 (74-267)||(38460058-38460251)
[»] chr5 (2 HSPs)
chr5 (74-221)||(18043375-18043522)
chr5 (72-141)||(15646266-15646335)
[»] chr6 (1 HSPs)
chr6 (74-138)||(522497-522561)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 21264658 - 21264394
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264658 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggt 21264559  T
Q  103 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264558 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaa 21264459  T
Q  203 caaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264458 caaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 21264394  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 21260077 - 21259995
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260077 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca 21259995  T

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Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 47805230 - 47804966
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805230 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggt 47805131  T
Q  103 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805130 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaa 47805031  T
Q  203 caaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805030 caaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 47804966  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 47800648 - 47800566
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca 85  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800648 gaaataatggtaaattatttttgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca 47800566  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 34167698 - 34167767
Alignment:
Q  72 aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg 141  Q
    |||||| |||||||||||||||||||||||||   ||| |||   ||| ||||||||||| |||||||||    
T  34167698 aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg 34167767  T

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Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 6847801 - 6847537
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6847801 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacgctccccctcaagttggt 6847702  T
Q  103 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6847701 gcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtgctcagatttaa 6847602  T
Q  203 caaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  6847601 caaatggaaattgaattattttggtctccagattttgtttaataaaccgccgatctacttccaca 6847537  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 6843198 - 6843115
Alignment:
Q  3 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843198 gaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac 6843115  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 5860714 - 5860783
Alignment:
Q  72 aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg 141  Q
    |||||| |||||||||||||||||||||||||   ||| |||   ||| ||||||||||| |||||||||    
T  5860714 aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg 5860783  T

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Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 74 - 267
Target Start/End: Original strand, 38460058 - 38460251
Alignment:
Q  74 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag 173  Q
    ||||| |||||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||||    
T  38460058 ctcacaccaacactccccctcaagttggtgcatagagatctcgaatacccaacttgtcaagtgagttgaagaagtctctgctacatacagcttttgtgag 38460157  T
Q  174 tatatctgctaactggtcctcagatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 267  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38460158 tatatctgctaattgatcttcagatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccaca 38460251  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 18043375 - 18043522
Alignment:
Q  74 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag 173  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||||| |||| | |||||  ||||||||||    
T  18043375 ctcacaccaacacttcccctcaagttggtgcacagagatcttgaatgcccaacttatcaagtgagttgtaaaagtctctggtacatacaacttttgtgag 18043474  T
Q  174 tatatctgctaactggtcctcagatttaacaaatggaaattgaattat 221  Q
    |||||||| ||| || || | |||||||||||||||||| ||||||||    
T  18043475 tatatctgataattgatctttagatttaacaaatggaaactgaattat 18043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 15646266 - 15646335
Alignment:
Q  72 aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttg 141  Q
    |||||| |||||||||||||||||||||||||   ||| |||   ||| ||||||||||| |||||||||    
T  15646266 aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttg 15646335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 522497 - 522561
Alignment:
Q  74 ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgag 138  Q
    ||||| |||||||||||||||||||||||||| ||| ||  | |||||| |||||||||||||||    
T  522497 ctcacaccaacactccccctcaagttggtgcatagatatcattaatgcctaacttgtcaagtgag 522561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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