View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_68 (Length: 278)
Name: NF0795_low_68
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 4488522 - 4488639
Alignment:
| Q |
48 |
ctcttgtagctttgaacattcttgatgtactctagtaggtctctaggcacaccttgtatttgggagctgctgtttggtttggttattcataatatcattt |
147 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4488522 |
ctcttgtggctttggacattcttgatgtactctagtaggtctctaggcacaccttgtgcttgggagctgctgtttggtttggttatttataatttcattt |
4488621 |
T |
|
| Q |
148 |
tggtttgttcaaagaaaa |
165 |
Q |
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||| ||||||||| |||| |
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| T |
4488622 |
tggcttgttcaaaaaaaa |
4488639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 42169590 - 42169702
Alignment:
| Q |
48 |
ctcttgtagctttgaacattcttgatgtactctagtaggtctctaggcacaccttgtatttgggagctgctgtttggtttggttattcataatatcattt |
147 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
42169590 |
ctcttgtagctttgaacattcttgttgtactctagtaggtctctaggcacaccttgtgcttgggagctactgtttggtttggttatttataattccattt |
42169689 |
T |
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| Q |
148 |
tggtttgttcaaa |
160 |
Q |
| |
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||| ||||||||| |
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| T |
42169690 |
tggcttgttcaaa |
42169702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 7935943 - 7935845
Alignment:
| Q |
164 |
aactactgcaagcaaggtatgatatccaataagaatgttaacgatccatattttgcaacgcactctctttaaatgctttaaattcacatgagtcgcatc |
262 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7935943 |
aactactgcaagcaagatatgatattcaataggaatgttaacgtcccacatttttcaacgcactctctttaaatgctttaaattcacatgagtcgcatc |
7935845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 7935965 - 7935927
Alignment:
| Q |
7 |
tcgaagaatattattacatcacaactactgcaagcaaga |
45 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
7935965 |
tcgaacaatattattacatcacaactactgcaagcaaga |
7935927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 36803481 - 36803364
Alignment:
| Q |
48 |
ctcttgtagctttgaacattcttgatgtactctagtaggtctctaggcacaccttgtatttgggagctgctgtttggtttggttattcataatatcattt |
147 |
Q |
| |
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|||||||||||||| |||| |||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36803481 |
ctcttgtagctttggacatacttggtgtact-tagtaggtctctaggtacaccttgtgcttgggagctgctgtttggtttggttatatataattccattt |
36803383 |
T |
|
| Q |
148 |
tggtttgttcaaagaaaac |
166 |
Q |
| |
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| ||||||||| ||||| |
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|
| T |
36803382 |
taccttgttcaaaaaaaac |
36803364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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