View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0795_low_70 (Length: 274)

Name: NF0795_low_70
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0795_low_70
NF0795_low_70
[»] chr7 (5 HSPs)
chr7 (53-240)||(17506963-17507150)
chr7 (53-240)||(17546064-17546251)
chr7 (61-222)||(15645130-15645291)
chr7 (53-125)||(45976471-45976543)
chr7 (52-116)||(551610-551674)
[»] chr8 (3 HSPs)
chr8 (50-240)||(25890961-25891151)
chr8 (192-240)||(18309115-18309163)
chr8 (62-116)||(37718866-37718920)
[»] chr6 (1 HSPs)
chr6 (52-222)||(7956709-7956879)
[»] chr1 (1 HSPs)
chr1 (148-240)||(39584913-39585005)
[»] chr3 (1 HSPs)
chr3 (52-203)||(14853834-14853985)
[»] chr5 (2 HSPs)
chr5 (159-209)||(32239704-32239754)
chr5 (159-204)||(17674020-17674065)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 17506963 - 17507150
Alignment:
Q  53 aggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccga 152  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17506963 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17507062  T
Q  153 ttcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17507063 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17507150  T

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Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 17546251 - 17546064
Alignment:
Q  53 aggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccga 152  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17546251 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17546152  T
Q  153 ttcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17546151 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17546064  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 15645291 - 15645130
Alignment:
Q  61 ctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgt 160  Q
    |||||||||||| ||||||| ||||| ||||||||||||  ||| ||||||||||||||  ||||||||||||||||  ||||||||  || ||||  ||    
T  15645291 ctaaaggtgtcagtctttgcttggcggctgctccgtgattaccttcctactaaatctaacttggcatcacgtggtataattaatgtggacgcttctatgt 15645192  T
Q  161 gtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 222  Q
    || |||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||    
T  15645191 gtgtttcggggtgtggccaggtggaggatgctcatcatttgtttttctcttgtccttgcttt 15645130  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 45976471 - 45976543
Alignment:
Q  53 aggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggc 125  Q
    ||||| || |||||||||| || ||||| ||||| |||||  |||||||||| ||||||||||||||| ||||    
T  45976471 aggtttttttaaaggtgtctatttttgcttggcggctgctttgtgatcgccttcctactaaatctaatttggc 45976543  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 551610 - 551674
Alignment:
Q  52 caggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatc 116  Q
    ||||||| | ||||||||||||| ||||| ||||| ||| ||||||||||| | ||||| |||||    
T  551610 caggttcctttaaaggtgtcaatttttgcttggcggctgatccgtgatcgcttgcctaccaaatc 551674  T

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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 25891151 - 25890961
Alignment:
Q  50 atcaggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgac 149  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |    
T  25891151 atcaggttcctctaaaggtgtcaatctttgcatggcgactgctccgtgatcgcctacctactaaatctaatttggcatcacgtggtatacttaaagtggc 25891052  T
Q  150 cgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  25891051 cgattctttgtgtatttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcttgttcttgctttggggagctgtggtctctg 25890961  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 18309115 - 18309163
Alignment:
Q  192 tagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18309115 tagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 18309163  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 37718920 - 37718866
Alignment:
Q  62 taaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatc 116  Q
    ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||    
T  37718920 taaaggtgtcaatttttgcttggcggctgctccgtgatcgcttacctaccaaatc 37718866  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 7956709 - 7956879
Alignment:
Q  52 caggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccg 151  Q
    |||||||  |||||||||||| ||||||| |||||  |||||||||||||||| ||||||||||||||  ||||||| ||||||||  ||||||||  ||    
T  7956709 caggttcccctaaaggtgtcagtctttgcttggcggttgctccgtgatcgccttcctactaaatctaacttggcatctcgtggtataattaatgtggacg 7956808  T
Q  152 attcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 222  Q
     ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7956809 cttctatgtgtgtttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcatgtccttgcttt 7956879  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 39585005 - 39584913
Alignment:
Q  148 accgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 240  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39585005 accgattctttgtgtattttggggtgtggccaggtggaggatgctcgtcatttgtttctctcgtgtccttgctttagggagttgtggtctctg 39584913  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 14853985 - 14853834
Alignment:
Q  52 caggttcttctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccg 151  Q
    |||||||| |||||||||||| ||||||| ||||| |||||||||||||| |  ||||||||||||||  ||||||||||||||||  ||||||||   |    
T  14853985 caggttctcctaaaggtgtcagtctttgcttggcggctgctccgtgatcgtcctcctactaaatctaacttggcatcacgtggtataattaatgtggatg 14853886  T
Q  152 attcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtt 203  Q
     ||||  |||| ||||||||||||| ||||||||||||||| ||||||||||    
T  14853885 cttctatgtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtt 14853834  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 32239754 - 32239704
Alignment:
Q  159 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctc 209  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32239754 gtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtttctctc 32239704  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 17674065 - 17674020
Alignment:
Q  159 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgttt 204  Q
    |||| |||| || ||||||||||||||||||||| |||||||||||    
T  17674065 gtgtgtttctggttgtggccaggtggaggatgctcgtcatttgttt 17674020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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