View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_74 (Length: 256)
Name: NF0795_low_74
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 15160900 - 15161078
Alignment:
| Q |
1 |
tcattaaacattaagatcactaaacacattgaaatg-atttatagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgac |
99 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15160900 |
tcattaaacattaagatcactaaacacattgaaacggatttctagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgac |
15160999 |
T |
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| Q |
100 |
ctaaatcaatttatattatcatcaatcaagctaaagaagcagaaacaattcaaaataagcttgacattaaacaacttat |
178 |
Q |
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| T |
15161000 |
ctaaatcaatttatattatcatcaatcaagctaaagaagcagaaacaatacaaaataagcttgacattaaacaacttat |
15161078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 40249924 - 40249985
Alignment:
| Q |
76 |
cggtttccctatatcaactctgacctaaatcaatttatattatcatcaatcaagctaaagaa |
137 |
Q |
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| T |
40249924 |
cggttcccccatatcaactctgacctaaatcaattagtattatcatcaatcaagctaaagaa |
40249985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 26880363 - 26880403
Alignment:
| Q |
103 |
aatcaatttatattatcatcaatcaagctaaagaagcagaa |
143 |
Q |
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| T |
26880363 |
aatcaatttgtattatcatccatcaagctaaagaagtagaa |
26880403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 32266233 - 32266289
Alignment:
| Q |
98 |
acctaaatcaatttatattatcatcaatcaagctaaagaagcagaaacaattcaaaa |
154 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
32266233 |
accttaattaatttatattatcatcaatcaagctaaagaaccagaaacaatacaaaa |
32266289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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