View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0795_low_92 (Length: 203)
Name: NF0795_low_92
Description: NF0795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0795_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 31192623 - 31192797
Alignment:
| Q |
11 |
cataggcacaacaaaagagcaaaagagggtcaaatctctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatcc |
110 |
Q |
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| T |
31192623 |
cataggcacaacaaaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatcc |
31192722 |
T |
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| Q |
111 |
actgtgctatatggtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcag |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31192723 |
actgtgctatatggtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcag |
31192797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 31014370 - 31014543
Alignment:
| Q |
11 |
cataggcacaacaaaagagcaaaagagggtcaaatctctgtgcttgaattatcttttgtagggactatgcaatatccttccagaaaataacattatatcc |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
31014370 |
cataggcacaacaaaagagcaaaagagggtcaaatttctgtgcttgaattatcttttgtagggactatgacatatccttcaagaaaataacattatatcc |
31014469 |
T |
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| Q |
111 |
actgtgctatatggtttttaagaaatagtttctgcaatgaggtttatatcaatgttataggcatttgatgtgcag |
185 |
Q |
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|||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
31014470 |
actgtgctatat-gtatttaagaaatagtttctgcagtgtagtttatatcaatgttataggcatttgatgtgcag |
31014543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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