View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796-Insertion-1 (Length: 1070)

Name: NF0796-Insertion-1
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796-Insertion-1
NF0796-Insertion-1
[»] chr3 (65 HSPs)
chr3 (6-1065)||(4141439-4142509)
chr3 (10-653)||(4157675-4158315)
chr3 (10-619)||(3754283-3754895)
chr3 (185-396)||(3745866-3746074)
chr3 (195-395)||(2678385-2678582)
chr3 (197-394)||(2686299-2686496)
chr3 (284-386)||(803213-803312)
chr3 (647-793)||(3754937-3755085)
chr3 (330-401)||(2456249-2456320)
chr3 (328-386)||(2696727-2696785)
chr3 (328-408)||(989394-989474)
chr3 (333-405)||(9587161-9587233)
chr3 (328-394)||(968669-968735)
chr3 (328-398)||(1931137-1931207)
chr3 (330-392)||(2644351-2644413)
chr3 (330-392)||(2659141-2659203)
chr3 (328-389)||(1007459-1007520)
chr3 (328-389)||(1022487-1022548)
chr3 (330-379)||(13498224-13498273)
chr3 (330-386)||(2442039-2442095)
chr3 (332-407)||(2459277-2459352)
chr3 (331-398)||(2631358-2631425)
chr3 (330-405)||(7334215-7334290)
chr3 (328-395)||(7432040-7432107)
chr3 (328-398)||(1940562-1940632)
chr3 (330-407)||(956381-956458)
chr3 (328-381)||(1891064-1891117)
chr3 (332-397)||(23197014-23197079)
chr3 (330-398)||(2476634-2476702)
chr3 (330-398)||(7942485-7942553)
chr3 (330-381)||(771499-771550)
chr3 (330-405)||(783775-783850)
chr3 (330-381)||(7324431-7324482)
chr3 (330-381)||(37753345-37753396)
chr3 (330-381)||(43991960-43992011)
chr3 (327-389)||(1936972-1937034)
chr3 (330-392)||(2502148-2502210)
chr3 (329-379)||(9608346-9608396)
chr3 (340-390)||(44001605-44001655)
chr3 (332-377)||(997578-997623)
chr3 (332-377)||(1013968-1014013)
chr3 (558-622)||(1889345-1889409)
chr3 (333-405)||(14888588-14888660)
chr3 (330-381)||(754609-754660)
chr3 (330-381)||(1437996-1438046)
chr3 (331-381)||(2492083-2492133)
chr3 (330-384)||(12133097-12133151)
chr3 (332-382)||(23230981-23231031)
chr3 (38-84)||(23231261-23231307)
chr3 (330-379)||(9561987-9562036)
chr3 (38-91)||(23235146-23235199)
chr3 (331-383)||(768327-768379)
chr3 (54-106)||(2678671-2678723)
chr3 (876-912)||(3755079-3755115)
chr3 (342-398)||(13479590-13479646)
chr3 (342-381)||(746383-746422)
chr3 (330-381)||(7430536-7430587)
chr3 (330-381)||(9565829-9565880)
chr3 (340-395)||(37757722-37757777)
chr3 (131-169)||(3745803-3745841)
chr3 (332-382)||(7398178-7398228)
chr3 (331-381)||(7442977-7443027)
chr3 (332-382)||(23234865-23234915)
chr3 (37-106)||(2686584-2686653)
chr3 (340-381)||(7427605-7427646)
[»] chr5 (19 HSPs)
chr5 (72-625)||(11081555-11082114)
chr5 (684-911)||(11082196-11082412)
chr5 (328-389)||(23766854-23766915)
chr5 (328-389)||(23816702-23816763)
chr5 (328-398)||(23769629-23769699)
chr5 (328-398)||(23819477-23819547)
chr5 (328-393)||(23732165-23732230)
chr5 (328-380)||(3181715-3181767)
chr5 (328-398)||(23861009-23861079)
chr5 (330-379)||(20292995-20293044)
chr5 (328-398)||(23764243-23764313)
chr5 (328-398)||(23814076-23814146)
chr5 (330-379)||(20301443-20301492)
chr5 (330-379)||(20305856-20305905)
chr5 (330-379)||(20310260-20310309)
chr5 (328-395)||(1427679-1427746)
chr5 (330-380)||(6401767-6401817)
chr5 (328-382)||(41973469-41973523)
chr5 (688-761)||(1427278-1427351)
[»] scaffold0044 (1 HSPs)
scaffold0044 (329-398)||(89142-89211)
[»] chr1 (16 HSPs)
chr1 (329-398)||(51381438-51381507)
chr1 (329-371)||(23896147-23896189)
chr1 (330-379)||(24629213-24629262)
chr1 (328-380)||(24513054-24513106)
chr1 (329-372)||(24246506-24246549)
chr1 (329-380)||(25478864-25478915)
chr1 (329-379)||(24242859-24242909)
chr1 (328-369)||(24634817-24634858)
chr1 (329-382)||(51858605-51858658)
chr1 (327-379)||(51782796-51782848)
chr1 (330-380)||(24626773-24626823)
chr1 (340-382)||(51407558-51407600)
chr1 (342-383)||(25609375-25609416)
chr1 (327-380)||(25610967-25611020)
chr1 (329-382)||(51756749-51756802)
chr1 (329-382)||(51854946-51854999)
[»] chr4 (6 HSPs)
chr4 (333-398)||(22672110-22672175)
chr4 (328-407)||(20019746-20019825)
chr4 (336-391)||(55419788-55419843)
chr4 (330-380)||(11032910-11032960)
chr4 (342-386)||(20016180-20016224)
chr4 (51-106)||(20020041-20020096)
[»] chr2 (11 HSPs)
chr2 (330-382)||(36577366-36577418)
chr2 (330-405)||(7160730-7160805)
chr2 (333-404)||(7168667-7168738)
chr2 (330-404)||(7156169-7156243)
chr2 (330-398)||(7174356-7174424)
chr2 (339-384)||(6538843-6538888)
chr2 (329-398)||(33038159-33038228)
chr2 (330-397)||(11237693-11237760)
chr2 (331-398)||(33020314-33020381)
chr2 (330-381)||(33026657-33026708)
chr2 (340-403)||(34560895-34560958)
[»] scaffold0015 (2 HSPs)
scaffold0015 (329-380)||(32330-32381)
scaffold0015 (329-380)||(40382-40433)
[»] chr7 (6 HSPs)
chr7 (329-380)||(1421170-1421221)
chr7 (330-407)||(1078134-1078211)
chr7 (329-398)||(39298976-39299045)
chr7 (187-311)||(1078245-1078369)
chr7 (334-383)||(3927063-3927112)
chr7 (340-381)||(27755733-27755774)
[»] chr8 (1 HSPs)
chr8 (328-397)||(19727879-19727948)
[»] chr6 (13 HSPs)
chr6 (331-390)||(24417477-24417536)
chr6 (332-398)||(19119065-19119131)
chr6 (332-398)||(19126359-19126425)
chr6 (334-391)||(176338-176395)
chr6 (334-379)||(9819831-9819876)
chr6 (333-389)||(370777-370833)
chr6 (340-391)||(1442098-1442149)
chr6 (334-379)||(9703888-9703933)
chr6 (334-379)||(9825517-9825562)
chr6 (329-382)||(17368365-17368418)
chr6 (334-384)||(7564748-7564798)
chr6 (329-382)||(4183000-4183053)
chr6 (329-382)||(4743844-4743897)
[»] scaffold0200 (1 HSPs)
scaffold0200 (328-382)||(777-831)
[»] scaffold1004 (1 HSPs)
scaffold1004 (331-378)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (331-378)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 936; Significance: 0; HSPs: 65)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 936; E-Value: 0
Query Start/End: Original strand, 6 - 1065
Target Start/End: Complemental strand, 4142509 - 4141439
Alignment:
Q  6 caatttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttg 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142509 caatttcttgatgaggattatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttg 4142410  T
Q  106 gaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacgctttattgtttc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  4142409 gaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcattggaatgtccatgctttattgtttc 4142310  T
Q  206 atttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgc 305  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142309 ttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgc 4142210  T
Q  306 ttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142209 ttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T
Q  406 cttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142109 cttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcc 4142010  T
Q  506 caggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgta 605  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142009 caggaggggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgta 4141910  T
Q  606 gtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggttttgcatcttcagaaat 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141909 gtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggttttgcatcttcagaaat 4141810  T
Q  706 tgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatgcattgcattatatg 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4141809 tgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatgcattgcattatatg 4141710  T
Q  806 gttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaa 905  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141709 gttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaa 4141610  T
Q  906 ttttatataatgtttgctac-aatcttgcatgtacagtatgaattgagataccgcgatggtcgca--tggtatat-aagaacgac-aagttataggagtg 1000  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||   ||||||| ||||||||| ||||||||||||||    
T  4141609 tcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgacaaagttataggagtg 4141510  T
Q  1001 tagagc-aaatg-attacttatattg-actgg-tttcta-ccacaaa-gtagtatagtgtctctagagtta 1065  Q
    |||||| ||||| ||||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||||    
T  4141509 tagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagtta 4141439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 653
Target Start/End: Complemental strand, 4158315 - 4157675
Alignment:
Q  10 ttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttggagg 109  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||    
T  4158315 ttcttgatgaggatgatagtttttttaacaaaactcaagtaaaggttcatactttgggtactaatatttggagaaccattcaggactatcattttggcgg 4158216  T
Q  110 tcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtc---ggaatgtccacgctttattgtttca 206  Q
    ||||  ||||||  |   ||||||||||||||||||||| || |||||||||||||||||  ||||   ||    ||||| |||| ||||||||||||||    
T  4158215 tcttattgttcccat---gaagggggaatttgtgagtggtacgattaattggttgttctctaaagagcagttctgggaatatccatgctttattgtttca 4158119  T
Q  207 tttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgct 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  4158118 tttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttgggtgttttgagggattgct 4158019  T
Q  307 tgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcc 406  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||    
T  4158018 tgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatctcttacaagagacatcc 4157919  T
Q  407 ttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaa---gtatgattttgacttgaatttgattctttacaat 503  Q
    |||||||  |||||    ||||| ||||||||||||||||||||||||||||||||||||| |   |||||||| ||||||||||||| | ||||||||     
T  4157918 ttctaaatttaaggcttttgccaaggcaatatatgtttttgaggatgatcaagtgttgctggagttgtatgattctgacttgaatttggtcctttacaac 4157819  T
Q  504 cccaggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatg 603  Q
    |||||||  || ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||   ||| || ||||||    
T  4157818 cccaggagcggcactttgaaggctactaattttaaactaattcctgaagtatgtattgaaagtttaatatcacctagttctcta---taggatgtagatg 4157722  T
Q  604 tagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg 653  Q
    ||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  4157721 tagtgc--tgtcacttgagcataggattatttccca-gaaaggttacatg 4157675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 619
Target Start/End: Original strand, 3754283 - 3754895
Alignment:
Q  10 ttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttggagg 109  Q
    |||||||||||||| |||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  3754283 ttcttgatgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccaggactatccttttggagg 3754382  T
Q  110 tcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacgctttattgtttcattt 209  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  3754383 tcttcctgttccagttatgaagggggaatttgtgagtggcacaattaattggttgttgtccgaagaatcatcggaatgtccacgctttattgtttctttt 3754482  T
Q  210 gatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttgt 309  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||| |||| |||||||||||||||||||||    
T  3754483 gatttggcaaaggagtcatatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacatgtcggctttgagtgttttgagggattgcttgt 3754582  T
Q  310 gcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatccttc 409  Q
    ||||   |||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3754583 gcgt---gacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgcatgagagatccttc 3754679  T
Q  410 taaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaat 503  Q
    ||||||  |||||  ||| | |||| | |||  |||||||||||||||||||||||||||||      ||||| |||||||||||||| ||||||||||     
T  3754680 taaacccgaggtctttgcgaaggcattgtatacttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaac 3754779  T
Q  504 cccaggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatg 603  Q
    |||||||  ||||| || ||||||| ||| ||||||   | ||| |||||||||| ||||||||||||||||||   ||||||||||||| || ||||||    
T  3754780 cccaggagcggtaccttgaaggctattaactttaaatatactccagaagtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatg 3754879  T
Q  604 tagtgctatgtcactt 619  Q
    | ||||||||||||||    
T  3754880 tggtgctatgtcactt 3754895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 185 - 396
Target Start/End: Original strand, 3745866 - 3746074
Alignment:
Q  185 atgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtt 284  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||| | | |||||| | |||||  |||||||||||  |    
T  3745866 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatagatgtgtgtgacttgtcgtct 3745965  T
Q  285 ttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 384  Q
    ||||||||||| |||||||||||||||||   |||||||||  ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| |    
T  3745966 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 3746062  T
Q  385 ctattccttaca 396  Q
    ||||||||||||    
T  3746063 ctattccttaca 3746074  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 195 - 395
Target Start/End: Complemental strand, 2678582 - 2678385
Alignment:
Q  195 tttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 294  Q
    ||||||||||| |||||||||||||  ||||||||||||||| | |||||||||| ||  |||||||   |||| ||| |  || |    ||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
Q  295 tgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 394  Q
    ||| ||||||||||||| ||||   || |||  ||||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||||||||||||    
T  2678482 tgaaggattgcttgtgcttgac---ttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctta 2678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 197 - 394
Target Start/End: Complemental strand, 2686496 - 2686299
Alignment:
Q  197 tattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttg 296  Q
    ||||||||| |||||||||||||  ||||||||||||||||| || ||||||| ||  |||||||| |||||  || || ||      ||||||||||||    
T  2686496 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 2686397  T
Q  297 agggattgcttgtgcgtgacgacttctggctatgatgtttggcttat---gaaggaatatggaaataaagagtcttggactaaattgttcactattcctt 393  Q
    |||||||| |||||| |||     | |||  ||||||||||| ||||   ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  2686396 agggattgtttgtgcttgatc---tgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcctt 2686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 803312 - 803213
Alignment:
Q  284 tttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 383  Q
    ||||||| | |||||||||||||||||| |||    ||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  803312 tttgggtatgttgagggattgcttgtgcatgat---ttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 647 - 793
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
Q  647 ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca 741  Q
    |||||||||| ||| |||||||||||||||| | ||||||  |    ||||| ||||||||| | |||||||||||||||||||||||| |||||||       
T  3754937 ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt 3755036  T
Q  742 ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca 793  Q
    ||||||| |||||   ||||||||||||||||||||| ||||||||| ||||    
T  3755037 ggttttttttctc---tcatacattacatttgatatagttcacaattttgca 3755085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 2456249 - 2456320
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgaga 401  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatgaga 2456320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 386  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 989394 - 989474
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcctt 408  Q
    ||||||||||| | ||||| || || |||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  989394 atgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcctt 989474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 9587233 - 9587161
Alignment:
Q  333 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||| ||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatgggagatc 9587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 968669 - 968735
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 394  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||    
T  968669 atgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 1931207 - 1931137
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| |||||| |||| ||||||||||||| || ||||||||||||||||||||| ||||||||    
T  1931207 atgatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttacatg 1931137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 392  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 392  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 1007459 - 1007520
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1007459 atgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 1022487 - 1022548
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1022487 atgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 386  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 2459277 - 2459352
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 407  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||  || ||||||||  |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtttaccgtttcttacatgccagatcct 2459352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 2631358 - 2631425
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| || | ||||| |||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 7334290 - 7334215
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    ||||||||| | |||||||| || |||||||||||||||||||||||||||| |||||||||| || ||| |||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaacctgaaagatc 7334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 7432107 - 7432040
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 395  Q
    |||||||||||  |||||||||||||||||||||||| || ||||||||||||||||| ||| |||||    
T  7432107 atgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttcttac 7432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 1940632 - 1940562
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||||||| ||| ||||    
T  1940632 atgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgcatg 1940562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 956381 - 956458
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 407  Q
    ||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||| |||| || |||||  |||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttcattatttctcacatgcaagatcct 956458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 1891117 - 1891064
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  1891117 atgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 23197014 - 23197079
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 397  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||||||   ||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacat 23197079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 2476634 - 2476702
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatg 2476702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 7942485 - 7942553
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| |||||||| || | |||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatg 7942553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 771550 - 771499
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 783850 - 783775
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    ||||||||| ||||||||||||||||||||| | || | |||||||||||||  ||| ||||||||||| ||||||    
T  783850 gatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 7324482 - 7324431
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 43991960 - 43992011
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 1937034 - 1936972
Alignment:
Q  327 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    |||||||||||| ||||||||||||||  ||||||||| || ||| |||||||||||||||||    
T  1937034 tatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactatt 1936972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 2502148 - 2502210
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 392  Q
    ||||||||| |||||||||| ||||||||||| |||| |||||||||| ||| ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacactattcct 2502210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 9608396 - 9608346
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  9608396 tgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 44001605 - 44001655
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattc 390  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaactgtacactattc 44001655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaa 377  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaa 377  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 558 - 622
Target Start/End: Complemental strand, 1889409 - 1889345
Alignment:
Q  558 gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag 622  Q
    ||||| ||||| ||||||||| |||||  |||||||||| ||||||| |||||||||||||||||    
T  1889409 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 1889345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 14888660 - 14888588
Alignment:
Q  333 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    |||||| ||||||| ||||||| |||||||||| ||| ||||||||||| || |||| |||||||| ||||||    
T  14888660 gtttggattatgaatgaatatgaaaataaagagccttagactaaattgtacaatattacttacatgggagatc 14888588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 754660 - 754609
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 1437996 - 1438046
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 2492083 - 2492133
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 12133097 - 12133151
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 384  Q
    ||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttca 12133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 23231031 - 23230981
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattgtt 23230981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 23231307 - 23231261
Alignment:
Q  38 caaaactcaagtaatggttcatactttgggtactaatatatggagaa 84  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  23231307 caaaactcaaggaatggttcatactttgggtactaattcatggagaa 23231261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 9562036 - 9561987
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 23235199 - 23235146
Alignment:
Q  38 caaaactcaagtaatggttcatactttgggtactaatatatggagaaccattca 91  Q
    |||||||||||  ||||||||||||||||||||||||  ||||||||| |||||    
T  23235199 caaaactcaaggcatggttcatactttgggtactaattcatggagaacaattca 23235146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 383  Q
    |||||||| ||||||| || || |||||| |||||||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2678723 - 2678671
Alignment:
Q  54 gttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 106  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||| |||||||||    
T  2678723 gttcatactttgggttctaatatttggagaaacattcaagagtttccttttgg 2678671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 876 - 912
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
Q  876 ttttgcaatgtatgctcaaggatgcacaaattttata 912  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3755079 ttttgcaatgtatgctcaaggatgcagaaattttata 3755115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 13479590 - 13479646
Alignment:
Q  342 atgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||||| || |||||    
T  13479590 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 13479646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  342 atgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 7430587 - 7430536
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| |||||||| | |||||||||||| |||||| |||||||||||    
T  7430587 gatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgt 7430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 9565880 - 9565829
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| |||||||||| || ||| || |||||||||||||||||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgt 9565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 37757777 - 37757722
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 395  Q
    ||||||||||||||||||| |||||||||||||| || |||| || | ||||||||    
T  37757777 ttatgaaggaatatggaaacaaagagtcttggacgaagttgtacagtgttccttac 37757722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 3745803 - 3745841
Alignment:
Q  131 gggggaatttgtgagtggcacaattaattggttgttctc 169  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  3745803 ggggaaatttgtgagtggcactattaattggttgttctc 3745841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 7398228 - 7398178
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||| | |||||||| ||||||||| |||||||||||| |||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgtt 7398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 7443027 - 7442977
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||| ||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgt 7442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 23234915 - 23234865
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||||| ||||| |||||||||||   |||||||||||||||||||||    
T  23234915 tgtttggctgatgaaagaatatggaaacgtagagtcttggactaaattgtt 23234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 2686653 - 2686584
Alignment:
Q  37 acaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 106  Q
    ||||| || |||||| |||||||||||||||| ||||||| |||| || ||| || |||| |||||||||    
T  2686653 acaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttgg 2686584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 7427646 - 7427605
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  7427646 ttatgatggaatatggaaataaagagtcgtgggctaaattgt 7427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 72 - 625
Target Start/End: Original strand, 11081555 - 11082114
Alignment:
Q  72 aatatatggagaaccattcaggagtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaatt-ggttgttctcc 170  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||  |||||| |||| ||| |||||||||||||||||| ||||||||| ||||||||||     
T  11081555 aatatttggagaaccattcaggattatctttttggcggtcttattgttcccgttatgaaaggggaatttgtgagtggcgcaattaatttggttgttctct 11081654  T
Q  171 gaagaatcgtcggaatgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttg 270  Q
     | |  |  | |||||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||      
T  11081655 aatgg-tgttgggaatgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgc 11081753  T
Q  271 gtgacttgtcggttttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttg 370  Q
    || ||||||||| ||||||||||||||||||||||||||| ||||||||| || |  ||||||||||| |||||||||| ||||||||||||||||||||    
T  11081754 gtaacttgtcggctttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttg 11081853  T
Q  371 gactaaattgttcactattccttacatgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaag 470  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | | |||  | ||| |||| ||||| | ||||||||||||||||||||| |||||    
T  11081854 gactaaattgtttactattccttacatgagagatccttctaaacgtgatgtctttcccaaggcagtatatatatttgaggatgatcaagtgttgttgaag 11081953  T
Q  471 t------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaa 564  Q
    |      |||||||||||||||||||||||||||||||||| ||||   ||||||| ||||||| ||||||||||   ||||| ||||||||||||||||    
T  11081954 tttatgaatgattttgacttgaatttgattctttacaatcctaggagccgtactttgaaggctaataattttaaagatattccagaagtctgtgttgaaa 11082053  T
Q  565 gtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcat 625  Q
    ||||| |||||||| |||||||||  ||  || ||||||| ||||| ||||||||||||||    
T  11082054 gtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtcacttgagcat 11082114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 684 - 911
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
Q  684 atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca 783  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| ||||    
T  11082196 atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca 11082295  T
Q  784 caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa 883  Q
    |||||||||||| | ||||||| | ||| ||||   |||||||||||||||          ||| ||||||||| ||| |||||| || ||||||||||     
T  11082296 caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat 11082384  T
Q  884 tgtatgctcaaggatgcacaaattttat 911  Q
    ||||||||||||| | ||||||| ||||    
T  11082385 tgtatgctcaaggttacacaaatattat 11082412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 23766915 - 23766854
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23766915 atgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 23816763 - 23816702
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23816763 atgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 23769699 - 23769629
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  23769699 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 23819547 - 23819477
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  23819547 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23819477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 23732165 - 23732230
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctt 393  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||| |||| |||||||||||||||    
T  23732165 atgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 3181715 - 3181767
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  3181715 atgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 23861079 - 23861009
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  23861079 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 23861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 23764313 - 23764243
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||| ||||||||||||||||| ||||    
T  23764313 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctttcatg 23764243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 23814146 - 23814076
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||||||| | |||||||||||||| |  | || ||||||||||||||||||||||||||||| ||||    
T  23814146 atgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctttcatg 23814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 1427746 - 1427679
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 395  Q
    ||||||||||| ||||||| || |||||||||| ||||||||||| |||| ||||||| ||| |||||    
T  1427746 atgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttcttac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 6401817 - 6401767
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||||    
T  6401817 gatgtttggcttatgaaggaatttgaaaatagagagtcatggactaaattg 6401767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 41973523 - 41973469
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||    
T  41973523 atgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaactgtt 41973469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 761
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
Q  688 ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat 761  Q
    ||||||| ||| |||||||||  | ||||||||||||||||| | ||||||| | |||||||||||||| ||||    
T  1427351 ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat 1427278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 89142 - 89211
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatg 89211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 23896189 - 23896147
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttgg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23896189 tgatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 24513054 - 24513106
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  24513054 atgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattg 24513106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 24246549 - 24246506
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttgga 372  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  24246549 tgatgtttggcttatgaaagaatacggaaataaagagtcttgga 24246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 25478864 - 25478915
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||| || |||||||| ||||||| |||||||    
T  25478864 tgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattg 25478915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 24242909 - 24242859
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  24242909 tgatgtttggcttatgaagatatacggaaataaagagtcttggattaaatt 24242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 24634858 - 24634817
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtctt 369  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  24634858 atgatgtttggcttatgaaggaatacggaattaaagagtctt 24634817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 51858605 - 51858658
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||| | ||||||||||||||||||  ||| |||||||||||||||||    
T  51858605 tgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 51782796 - 51782848
Alignment:
Q  327 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    |||||||||||| |||||||||||||||||||| || | ||||||| ||||||    
T  51782796 tatgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 24626823 - 24626773
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||  ||| |||||||||||||  |||||||    
T  24626823 gatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattg 24626773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 51407600 - 51407558
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  51407600 ttatgaaggaatatgggaatgaacagtcttggactaaattgtt 51407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 25609416 - 25609375
Alignment:
Q  342 atgaaggaatatggaaataaagagtcttggactaaattgttc 383  Q
    ||||||||||||| || | |||||||||||||||||||||||    
T  25609416 atgaaggaatatgaaattcaagagtcttggactaaattgttc 25609375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 25611020 - 25610967
Alignment:
Q  327 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||| |||| |||||| ||||||||||| ||||||  |||||||    
T  25611020 tatgatgtttggctaatgacggaatacggaaataaagaatcttgggttaaattg 25610967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 51756802 - 51756749
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  51756802 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 51854946 - 51854999
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||| | ||||| ||||||||||||  ||| |||||||||||||||||    
T  51854946 tgatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 22672175 - 22672110
Alignment:
Q  333 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||||| | |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatg 22672110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 20019825 - 20019746
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 407  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||||||||||||||| || || |||||  |||||||    
T  20019825 atgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatcct 20019746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 55419788 - 55419843
Alignment:
Q  336 tggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 391  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtttactattcc 55419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 11032910 - 11032960
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  11032910 gatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattg 11032960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  342 atgaaggaatatggaaataaagagtcttggactaaattgttcact 386  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 20020096 - 20020041
Alignment:
Q  51 atggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 106  Q
    ||||||||||| |||||||||||| | |||| || ||||||||||| |||||||||    
T  20020096 atggttcataccttgggtactaatttttggaaaagcattcaggagtgtccttttgg 20020041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 7160805 - 7160730
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 405  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatc 7160730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 7168738 - 7168667
Alignment:
Q  333 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagat 404  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||    ||||||||||| |||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 7156243 - 7156169
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagat 404  Q
    |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||  | ||||||||||| |||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 7174424 - 7174356
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||| |||||||  | |||||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 6538843 - 6538888
Alignment:
Q  339 cttatgaaggaatatggaaataaagagtcttggactaaattgttca 384  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 33038159 - 33038228
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| |  | |||||||||||    
T  33038159 tgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccgtgttccttacatg 33038228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 11237693 - 11237760
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 397  Q
    ||||||||||||||| |||| |||||||||| |||  |||||||||||||||||  | ||||||||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 33020314 - 33020381
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||| ||||| |  | |||||||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatg 33020381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 33026657 - 33026708
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 34560958 - 34560895
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagaga 403  Q
    ||||||| ||||||||||||||| | ||||||||||||||||  | | ||||| ||||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcctaacatgagaga 34560895  T

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Target: scaffold0015 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 32381 - 32330
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  32381 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 40433 - 40382
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  40433 tgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattg 40382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 1421221 - 1421170
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 380  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 1078211 - 1078134
Alignment:
Q  330 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 407  Q
    ||||||||| |||||||||| |||||||||| |||||| |||||||||||||||| | || |||||| | ||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 1078134  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 39298976 - 39299045
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    |||||||||| || ||||||||| ||||||||||||||| ||||||||||| | || | |||||||||||    
T  39298976 tgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatg 39299045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 311
Target Start/End: Complemental strand, 1078369 - 1078245
Alignment:
Q  187 gtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtttt 286  Q
    |||| |||||||||||||| |||||||||| ||  || |||||||||||| |||  |||||| |||  |||||||| |||||  || |||| |  |  ||    
T  1078369 gtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagcctt 1078270  T
Q  287 gggtgttttgagggattgcttgtgc 311  Q
    |||||| ||||||||||||||||||    
T  1078269 gggtgtgttgagggattgcttgtgc 1078245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 383  Q
    ||||| |||||||||| |||||||||||| | ||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 27755733 - 27755774
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgt 381  Q
    |||||||||||||| ||||||||||||| | |||||||||||    
T  27755733 ttatgaaggaatatagaaataaagagtcatagactaaattgt 27755774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 19727879 - 19727948
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 397  Q
    ||||||||||| ||||||  ||||||| |||||||||||| ||||||||| ||||||||||| |||||||    
T  19727879 atgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttacat 19727948  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 24417536 - 24417477
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattc 390  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||||| || |||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtacagtattc 24417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 19119065 - 19119131
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||   | |||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatg 19119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 19126359 - 19126425
Alignment:
Q  332 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 398  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||   | |||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatg 19126425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 176338 - 176395
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 391  Q
    |||||| |||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttcc 176395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 370833 - 370777
Alignment:
Q  333 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 389  Q
    |||||| |||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatt 370777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 1442149 - 1442098
Alignment:
Q  340 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 391  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcactgttcc 1442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 9825562 - 9825517
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 379  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  9825562 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 9825517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 17368365 - 17368418
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||||| ||||| || ||||||||| ||| ||||||||||||||||||    
T  17368365 tgatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtt 17368418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  334 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 384  Q
    ||||| |||||||||| |||||||| || || |||||||||||||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 4183053 - 4183000
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4183053 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 4743897 - 4743844
Alignment:
Q  329 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4743897 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 831 - 777
Alignment:
Q  328 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 382  Q
    ||||||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||    
T  831 atgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaactgtt 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 2144 - 2191
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaat 378  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||    
T  2144 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 378
Target Start/End: Original strand, 4639 - 4686
Alignment:
Q  331 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaat 378  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||    
T  4639 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 4686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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