View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0796-Insertion-10 (Length: 373)
Name: NF0796-Insertion-10
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0796-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 373
Target Start/End: Original strand, 48845761 - 48846128
Alignment:
| Q |
6 |
cattaataaaagaaatacgtccctgcaagcattaagttttgaacagctgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaa |
105 |
Q |
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| T |
48845761 |
cattaataaaagaaatacgtcattgca-gcattaagttttgaaaaggtgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaa |
48845859 |
T |
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| Q |
106 |
tgtataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttc |
205 |
Q |
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| T |
48845860 |
tatataaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttc |
48845959 |
T |
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| Q |
206 |
cta-ggagtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttg |
304 |
Q |
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| T |
48845960 |
ctagggattttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtattctttgatcacttg |
48846059 |
T |
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| Q |
305 |
aggcttctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagtttagctttc |
373 |
Q |
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| T |
48846060 |
aggcttctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagtttagctttc |
48846128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 7016751 - 7016404
Alignment:
| Q |
11 |
ataaaagaaatacgtccctgcaagcattaagttttgaacagctgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaatgtat |
110 |
Q |
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| T |
7016751 |
ataaaagaaatacgtcactgcaa-cattaagttttgaacaggtgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaatatat |
7016653 |
T |
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| Q |
111 |
aaatccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta-g |
209 |
Q |
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| T |
7016652 |
aaacccaactacataacagccgtcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcagctgtctcatttcttcccagg |
7016553 |
T |
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| Q |
210 |
gagtttggcaccaagtgctctctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgaggct |
309 |
Q |
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| T |
7016552 |
gagtttggcaccaagaactct--------ctccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcctggatcacttgaggct |
7016461 |
T |
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| Q |
310 |
tctcattgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagttt |
366 |
Q |
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| T |
7016460 |
tctcactgataatttgagcaagttgtgcctgagtaagcttcttgtccatcctagttt |
7016404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 35 - 326
Target Start/End: Original strand, 17725506 - 17725790
Alignment:
| Q |
35 |
cattaagttttgaacagctgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaatgtataaatccaactacataacagccgtc |
134 |
Q |
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| T |
17725506 |
cattaagttttgaataggtgaaagctttagcgacacatacatacaaaagcaaacaacaaagtacagtgaattatataaatccaactacataatagccgtc |
17725605 |
T |
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| Q |
135 |
agattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaactttctcatttcttccta-ggagtttggcaccaagtgctctctc |
233 |
Q |
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| T |
17725606 |
agattagctttaacagtgtaaaatagatctaactacatacacagccatcaaattaactttctcatttcttcccacggagtttggcaccaagagctct--- |
17725702 |
T |
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| Q |
234 |
caagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataatttga |
326 |
Q |
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| T |
17725703 |
-----ctccaacttgccaattatatgctgatttggaatggctttccccgactcgtactcgtggatcacttgaggcttctcattgataatttga |
17725790 |
T |
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Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 33 - 322
Target Start/End: Original strand, 35376161 - 35376439
Alignment:
| Q |
33 |
agcattaagttttgaacagctgaaagcttcaggcacacatacatgcaaaagcaaacaaccaaggatagtgaaatgtataaatccaactacataacagccg |
132 |
Q |
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| T |
35376161 |
agcattaagtta-gaacaggtgaaagcttcaggca----tgcatgcaaaagcaaccaaccaaggacagtgaaatatataaattcaactacataacagccg |
35376255 |
T |
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| Q |
133 |
tcagattagcttcaacagtgtaaaatagatccaactacatacacaaccatcaaatcaac-tttctcatttcttccta-ggagtttggcaccaagtgctct |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||| | | || ||||||||||| ||||| |
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| T |
35376256 |
tcagattagcttcaacagtgtaaaatagatccaactacatacacagccatcaaattagcttttctcatttcttcccacgcagcttggcaccaagagctct |
35376355 |
T |
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| Q |
231 |
ctccaagactccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgataat |
322 |
Q |
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| T |
35376356 |
--------ctccaacttgccaattatctgctgatttggaatggctttccccgactcatactcctggataacttgaggcttctcattgataat |
35376439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 35376532 - 35376570
Alignment:
| Q |
323 |
ttgagcaagttgtgcctgagtaagcttcttgtccatcct |
361 |
Q |
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| T |
35376532 |
ttgagcaagttgtgcctgagtaagcttcttttccgtcct |
35376570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 31044713 - 31044633
Alignment:
| Q |
239 |
ctccaacttgccaattatcatctgatttggaatggctttccccgactcgtactcttggatcacttgaggcttctcattgat |
319 |
Q |
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| T |
31044713 |
ctccaacttgctaattatctgctggtttggaatggctttccctgactcatactcttggatcacttgaggcttctcattgat |
31044633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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