View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0796-Insertion-12 (Length: 175)

Name: NF0796-Insertion-12
Description: NF0796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0796-Insertion-12
NF0796-Insertion-12
[»] chr2 (1 HSPs)
chr2 (8-175)||(17441864-17442031)
[»] chr6 (6 HSPs)
chr6 (39-175)||(33283505-33283641)
chr6 (39-166)||(33357835-33357961)
chr6 (39-175)||(33386977-33387113)
chr6 (45-122)||(33418459-33418536)
chr6 (39-110)||(33261510-33261581)
chr6 (48-122)||(33302888-33302962)
[»] scaffold0428 (1 HSPs)
scaffold0428 (39-175)||(5268-5404)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 6e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 17441864 - 17442031
Alignment:
Q  8 gcatccatgtcatccacagnnnnnnntcttcaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt 107  Q
    |||||||||||||||||||       |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17441864 gcatccatgtcatccacagaaaaaaatctcgaaccgccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagt 17441963  T
Q  108 ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcc 175  Q
    |||||||||||||||||||       ||||||||||||||||||||| || |||||||||||||||||    
T  17441964 ttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcc 17442031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 5e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 33283641 - 33283505
Alignment:
Q  39 aaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnntcttg 138  Q
    |||| ||||||||||||||||| |||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||       ||| |    
T  33283641 aacctccatatcagccacagaaacagaagtatccgcggaggcaccggattcacctgttgcagatgaagtttctactgaatctcaacagaaaaaaatctcg 33283542  T
Q  139 aacctccatatcattgttcaattcattggtcagttcc 175  Q
    |||||||||||||||| || ||||||||||| |||||    
T  33283541 aacctccatatcattggtcgattcattggtcggttcc 33283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 33357961 - 33357835
Alignment:
Q  39 aaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnntcttg 138  Q
    |||| |||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |    
T  33357961 aacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacag-aaaaaatctcg 33357863  T
Q  139 aacctccatatcattgttcaattcattg 166  Q
    |||||||||||||||| || ||||||||    
T  33357862 aacctccatatcattggtcgattcattg 33357835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 33387113 - 33386977
Alignment:
Q  39 aaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnntcttg 138  Q
    |||| |||||||||||||||||  ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||       |||      
T  33387113 aacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagtttctactgaatctcaacagaaaaaaatctca 33387014  T
Q  139 aacctccatatcattgttcaattcattggtcagttcc 175  Q
    |||||||||||||||  || ||||||||||| |||||    
T  33387013 aacctccatatcatttgtcgattcattggtcggttcc 33386977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 33418536 - 33418459
Alignment:
Q  45 catatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc 122  Q
    |||||||||||||||| | |||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||    
T  33418536 catatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctcc 33418459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 33261581 - 33261510
Alignment:
Q  39 aaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttc 110  Q
    |||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||| |||||||||||||||    
T  33261581 aacctccatatcagccacagaaacagaagtatccgcggaggcaccagattcacctgctgcagatgaagtttc 33261510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 33302962 - 33302888
Alignment:
Q  48 atcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc 122  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||   ||||||||||||| |||||||||    
T  33302962 atcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctcc 33302888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 5404 - 5268
Alignment:
Q  39 aaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnntcttg 138  Q
    |||| ||||||||||||||||| | |||||||| | ||||| |||  |||||||||||||| ||||||||||||||||||||| ||||       ||| |    
T  5404 aacctccatatcagccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagtttctactgaatctcaacagaaaaaaatctcg 5305  T
Q  139 aacctccatatcattgttcaattcattggtcagttcc 175  Q
    |||||||||||||||| |||||||||||||| |||||    
T  5304 aacctccatatcattggtcaattcattggtcggttcc 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5219 times since January 2019
Visitors: 5755